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E coli bl21 de3 plyss

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E. coli BL21 (DE3) pLysS is a competent bacterial cell line commonly used for the expression of recombinant proteins. It is derived from the E. coli B strain and contains the DE3 lysogen, which allows for the inducible expression of target proteins under the control of the T7 promoter. The pLysS plasmid provides additional control over basal expression levels, helping to prevent the expression of potentially toxic proteins.

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14 protocols using e coli bl21 de3 plyss

1

Engineered E. coli for Ferulenol Bioconversion

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The pCDFDuet-AtaPT-CstDXS transformed into E. coli BL21(DE3)pLysS (Promega, Madison, WI, USA) by heat shock method. The engineered strains carrying pCDFDuet-AtaPT-CstDXS were cultured in the LB medium containing streptomycin (50 μg/mL) and chloramphenicol (34 μg/mL) at 37 °C, 200 rpm for 18 h. The 1.5 mL of culture was then inoculated into the 500 mL Erlenmeyer flask containing 150 mL of the same medium and was further cultivated at 37 °C (200 rpm) until the OD600 reached 1.0. The gene expression was induced by adding 1 mM IPTG (final concentration); after that, cells were grown at 18 °C, 250 rpm for 5 h. To start the bioconversion process, 3 mM 4HC (1) (TCI, Tokyo, Japan) and 3 mM MgCl2 were supplied to the induced culture and the cells were further cultivated at the same condition for 18 h. After that, the culture medium was harvested by centrifugation at 4 °C, 8000 rpm for 10 min. E. coli BL21(DE3)pLysS carried pCDFDuet-AtaPT-CstDXS that was grown in parallel at the same condition, except without the supplement of 4HC (1) used as the control in this study. Since ferulenol (2) is light-sensitive, the bioconversion experiment throughout this study took place in the darkness to minimize the product degradation.
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2

Expression and Purification of Fibronectin Domains

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His-tagged fibronectin (domains 7–10) was expressed from pET15bFN-III7-10RGE [19 (link)] in E.coli BL21(DE3)pLysS (Promega, cat. no. L1195) and purified using Ni-NTA chromatography. Aliquots of the purified protein were frozen in liquid nitrogen and stored in PBS (pH 7.4) at a concentration of 1 mg ml−1 at −80 °C.
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3

Cloning and Expression of Peach UGT Genes

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Construction of expression plasmids of peach UGT genes were carried out by cloning the full-length ORFs with the N-terminal His-tag into the pET6xHN expression vector (Clontech, Palo, CA, USA). Primers for cloning were listed in Supplementary Table S1. The identity of the cloned gene was confirmed by sequencing of the complete insert. Recombinant proteins were heterologous expressed in E. coli BL21 (DE3) pLysS (Promega, Madison, WI, USA). The transformed cells were precultured at 37°C overnight in 20 mL Luria-Bertani (LB) medium containing 100 μg mL-1 ampicillin, and then inoculated into 1 L LB medium containing the same antibiotics. The culture was grown at 37°C at 150 rpm to an OD (600 nm) = 0.5 to 0.6, and the protein expression was induced with 1 mM isopropylthio-β-galactoside (IPTG). The culture was incubated at 16°C at 150 rpm for 20 h. The cells were harvested by centrifugation (4,000 g, 4°C, and 15 min) and resuspended in 1× PBS (1.37 M NaCl, 26.8 mM KCl, 20.3 mM Na2HPO4, and 17.6 mM KH2PO4, pH 7.2–7.4). After storing at -80°C overnight, the cells were disrupted by sonication. The supernatant was obtained by centrifugation (10,000 g, 4°C, and 30 min), and then purified using TALON Spin column (Clontech, Palo, CA, USA) following the manufacturer’s instructions.
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4

Expression and Purification of NDP52 Proteins

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Expression vectors of maltose-binding protein (MBP)-fused wild type (WT)-NDP52 and the NDP52-D439R mutant, and MBP-LacZ were expressed in Escherichia coli Rosetta 2 (DE3) (Novagen) and purified using amylose resin (New England Biolabs). The glutathione S-transferase (GST)-fused NDP52-UBZ domain was expressed in E. coli BL21 (DE3)pLysS (Promega) and purified with a GSTrap column (GE Healthcare).
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5

Recombinant Antigen Expression in E. coli

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The E. coli BL21 (DE3) pLysS (Promega, USA) was used to express recombinant antigens. The pET28a plasmid (Novagen, USA) was used to construct an expression system. The E. coli cells with plasmids were cultured aerobically at 30°C in Luria-Bertani (LB) media supplemented with 50 μg/ml of kanamycin and 50 μg/mL of chloramphenicol. Restriction enzymes were purchased from New England Biolabs (USA) and reagents of polymerase chain reaction (PCR) from CinnaGen (CinnaGen, Iran). Purification system using nickel nitrilotriacetic acid (Ni-NTA) resin (Qiagen, Germany) was provided by Invitrogen (USA). Isopropyl-D-thiogalactopyranoside (IPTG), agarose, and reagents of protein purification were purchased from Sigma-Aldrich (USA). The NC membrane was purchased from Bio-Rad (USA). Goat anti-human IgG and IgM horseradish peroxidase (HRP) labeled conjugates, diaminobenzidine substrate (DAB), and prestained protein markers were purchased from Sigma-Aldrich (USA).
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6

Recombinant GST-LifeAct-GFP Expression

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Expression of GST-LifeAct-GFP was induced in E. coli BL21 (DE3-pLysS) (Promega) using 0.5 mM IPTG at 30°C for 4 hr. The recombinant protein was purified on Glutathione sepharose 4B beads according to the manufacture’s instructions (GE Healthcare). The elution buffer containing glutathione was exchanged to reactivation buffer (0.16 M sucrose, 5 mM MgCl2, 50 mM potassium acetate, 20 mM MOPS–NaOH [pH 7.0], pH adjusted to 7.5) using PD Minitrap G-10 columns (GE Healthcare). The purified recombinant proteins were stored at −80°C.
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7

Construction of scFvStx1 Recombinant Antibody

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For the second scFv arrangement gene, the DNA fragments encoding the corresponding VL and VH domains were amplified from the previous synthetic gene, using as primers: VLFw (5′ CCT ATG CAT CCG ATT ACA AAG ATG ACG ATG ACA AAG GCG GTG ATA TCC AGC TGA CCC AGA G 3′), VLRv (5′ CTG CCA CCA CTA CTA CCA CTA GCG GCA GTA GTA CCC TTC AGT TCT AAT TTG GTA CC 3′), VHFw (5′ GTG GTA GTA GTG GTG GCA GTA GCA GTG GTG CCG AAG TTC AGT TAC AGC AGA GC 3′) and VHRv (5′ TTG TCG GCC GAA GAC ACG GTA ACT GAG GTA C 3′). The resulting gene was designated scFvStx1, and for this construction, the orientation was VL-Linker-VH, while the linker was also changed (Figure 2). Both scFvStx1 DNA and the pscFvHis-MBP [14 (link)] vector were double-digested with NsiI and EagI (NEB, Knowl Piece, Wilbury Way, Hitchin, UK) and purified with Qiaquick PCR purification (Qiagen, Hilden, Germany). Cloning was performed using T4 ligase (Invitrogen), following the manufacturer’s recommendations and transformed into E. coli BL21 (DE3) pLysS (Promega, Madison, WI, USA) competent cells [13 (link)]. The recombinant vector was confirmed by plasmid sequencing, and the final construction was designated pscfvStx1.
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8

Cultivation of Rumen Microorganisms

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P. brevis GA33 and P. ruminicola 23 were obtained from the ATCC. C. pasteurianum 5 and P. ruminis A12-1 were obtained from the DSMZ. S. ruminantium HD4 was obtained from Michael Flythe (USDA-ARS, Lexington, KY) and originally isolated by Marvin Bryant57 (link). E. coli BL21(DE3)pLysS was from Promega.
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9

Recombinant Protein Expression and Purification

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The full-length coding sequences were cloned into pET-6×HN expression vector (Clontech, Mountain View, CA) with an N-terminal His-tag using primers in Table S4. The constructs were transformed into E. coli BL21(DE3) pLysS (Promega, Madison, WI, USA). The transformed cells were cultured at 37°C in Luria–Bertani medium until optical density at 600 nm reached 0.6. Isopropyl-β-D-thiogalactopyranoside was added to induce protein expression at 16°C overnight. The cells were collected by centrifugation (6,000 g, 4°C, 10 min), resuspended in Tris–HCl buffer (100 mM Tris, 2 mM dithiothreitol, pH 7.0), and were then disrupted by freeze–thawing. Recombinant proteins were purified by His TALON gravity column (Clontech) following the manufacturer's instructions. The presence of the recombinant proteins was confirmed by sodium dodecyl sulfate–polyacrylamide gel electrophoresis.
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10

Preparation and Characterization of C230-A TG2 Mutant

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The human C230-A TG2 mutant was prepared by overlap extension mutagenesis using primers described in [32 (link)] and cloned into a rhamnose-inducible expression plasmid for human TG2 [59 (link)]. An N-TG2 expression plasmid was created using PCR, and a stop codon inserted at position 471. All TG2 proteins were expressed in E. coli BL21(DE3pLysS) (Promega) and purified to homogeneity [59 (link)]. Enzymatic activity was measured as monodansylcadaverine incorporation into N,N-dimethylcasein and cleavage of the internally quenched fluorescent substrate Abz-APE(γ-cad-Dnp) QEA (Zedira, Darmstadt, Germany) [60 (link)]. TG2 was incubated with a 10-fold molar excess of GTPγS for 30 min at 4 °C to form TG2-GTPγS, and free nucleotides were removed using a PD10 column (GE-Healthcare, Chicago, IL, USA). Ca2+-activated TG2 was prepared by adding 1 mM CaCl2 prior to cell stimulation.
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