The largest database of trusted experimental protocols

Realtime pcr master mix

Manufactured by Toyobo
Sourced in Japan, United States

Realtime PCR Master Mix is a ready-to-use solution that contains all the necessary components for real-time PCR amplification and detection. It includes a DNA polymerase, dNTPs, MgCl2, and other buffers optimized for efficient and reliable real-time PCR performance.

Automatically generated - may contain errors

84 protocols using realtime pcr master mix

1

Quantifying Gene Expression in HCC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from HCC tissues and cells using Trizol Reagent (Invitrogen) following the manufacturer’s instructions. One microgram total RNA was converted to first-strand cDNA using the PrimeScript RT reagent kit (TaKaRa, Japan). Real-time quantitative reverse-transcription polymerase chain reaction (qRT-PCR) was performed with the Realtime PCR Master Mix (Toyobo, Osaka, Japan) according to the manufacturers’ instructions by an ABI 7900HT real-time PCR system (Applied Biosystems, Foster City, CA, USA), following temperature profiles: 1 cycle at 95 °C (2 min), 40 cycles of denaturation at 95 °C (30 s), and annealing at 60 °C (1 min). The primer sequences used were as follows: 5′-CCACCGGGATGTTCTCCCT-3′ (forward primer) and 5′-TTCAGCCCCAACTTGTTTGGA-3′ (reward primer) for GTSE1; 5′-ACCCAGAAGACTGTGGATGG-3′ (forward primer) and 5′-CAGTGAGCTTCCCGTTCAG-3′ (reward primer) for GAPDH. Then, the 2 − ∆∆CT method was used to determine the relative gene expression levels, and each experiment was repeated at least three times.
GAPDH was used as an internal control.
+ Open protocol
+ Expand
2

Gene Expression Analysis in Cells and Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples were stored in RNALater (Catalog No. AM7020, Thermo Fisher Scientific, Waltham, Ma, USA), and total RNAs were isolated from cells at 48 h after DNA transfection or mouse tissues using TRIzol reagent (Catalog No. 15596026, Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol. The concentration and purity of total RNA were measured using UV spectrophotometric analysis at 260 nm. The cDNAs were synthesized using a Revertra Ace qPCR RT Kit (Catalog No. FSQ-101, Toyobo, Osaka, Japan). Real-time PCR was conducted using real-time PCR Master Mix (Catalog No. FSQ-201, Toyobo, Osaka, Japan). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was used as the endogenous control. The PCR mixtures were prepared according to the manufacturer’s protocol and amplification was performed under PCR conditions of 40 cycles of 15 s at 95 °C, 20 s at 55 °C, and 30 s at 70 °C on a ABI PRISM 7300 Fluorescent Quantitative PCR System (Applied Biosystems, Foster City, CA, USA). Primer sequences are listed in Supplementary Table 3. Expression-fold changes were calculated using the 2−△△ct method31 (link).
+ Open protocol
+ Expand
3

Nanomaterial-Based Molecular Diagnostic Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
AgNWs (average diameter of about 40 nm and an average length of about 8 µm, 0.3 wt%) coated with polyvinylpyrrolidone (PVP) was purchased from Nanopyxis Co, Ltd (Seoul, Republic of Korea) (Figure S1). Glass fiber filter with pore size of about 0.7 µm (GFF, model no. 1825‐047) was purchased from Whatman (Maidstone, UK). Complimentary DNA (cDNA) synthesis kit was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Primers and templates were synthesized by Bioneer (Daejeon, Republic of Korea). Real‐time PCR master mix was purchased from Toyobo (Osaka, Japan) and PCR master mix without any dye was purchased from Takara (Shiga, Japan). WarmStart LAMP kit was purchased from New England Biolabs (Ipswich, MA, USA). EVAGreen (20×, 25 µM) was purchased from Biotium (Fremont, CA, USA) and ROX (50×, 25 µM) was purchased from Bio‐Rad (Hercules, CA, USA).
+ Open protocol
+ Expand
4

Quantitative Analysis of RNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated with RNA iso Plus (Takara, D9108B) according to the manufacturer's instructions. Relative gene expression was determined using quantitative RT-PCR. Total RNA was reverse-transcribed using reverse transcription kit (Takara, D6130). Quantitative PCRs were performed using SYBR Green PCR Master Mix (Toyobo, QPK-201). Relative mRNA levels were normalized to ACTB. Primers used were: 5′-GGAAATCGTGCGTGACATTAA-3′ (ACTB, forward); 5′-TCGAGGCAGCTCGTAGCTCTT-3′ (ACTB, reverse); 5′-CCCACCTCTGACAAGGAAACA-3′ (PARK2, forward); 5′-TCGTGAACAAACTGCCGATCA-3′ (PARK2, reverse). qRT-PCRs of miRNAs were performed according to the manufacturer's instruction using a TaqMan MicroRNA reverse transcription kit (Applied Biosystems, 43366597) and Real-time PCR Master Mix (Toyobo, QPK-101). MiRNA probes were: has-miR-181a (Applied Biosystems, 000480), RNU6 (Applied Biosystems, 001093). Fold-changes were calculated using the ΔΔCt method with normalization to RNU6.
+ Open protocol
+ Expand
5

Metabolic and Inflammatory Markers in Eggs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hen eggs were purchased from Zhongbai Holdings Group Corporation (Wuhan, Hubei, China). Total plasma triglycerides (TG), total cholesterol (TC), HDL‐C, LDL‐C, glucose, alanine aminotransferase (ALT), aspartate aminotransferase (AST), C‐reactive protein (CRP), and urinary microalbumin kits were obtained from Daiichi Pure Chemicals. Plasma ghrelin kit was provided by Phoenix Pharmaceuticals. Plasma insulin kit was obtained from Mercodia AB and creatinine kit was obtained from Abcam. Total plasma apolipoprotein A‐I (apoA‐I) and apolipoprotein B (apoB) kits were obtained from Invitrogen. Ficoll‐Paque PREMIUM was obtained from GE Healthcare (1.077 g/ml). Ethylene diamine tetraacetic acid (EDTA) was obtained from Sigma‐Aldrich and TRIZOL reagent was obtained from Life Technologies corporation. The real‐time PCR Master Mix was provided by Toyobo and mRNA primers were obtained from Sango Biotech.
+ Open protocol
+ Expand
6

Quantitative Analysis of ISG Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was extracted from mouse serum and liver samples by SepaGene RV-R (EIDIA Co.,LTD., Tokyo, Japan), and dissolved in 8.8 μL RNase-free water. Extracted RNA was reverse transcribed using random primer (Takara Bio Inc., Shiga, Japan) and M-MLV reverse transcriptase (ReverTra Ace, TOYOBO Co.,LTD., Osaka, Japan) in 20 μL reaction mixture according to the instructions provided by the manufacturer. Nested polymerase chain reaction (PCR) and HCV quantitation by Light Cycler (Roche Diagnostics K.K., Tokyo, Japan) were performed as previously described [22 (link)]. Quantitation of ISG expression (HLA-DMB, GTP-binding protein [GBP5]) was performed using real-time PCR Master Mix (TOYOBO) and TaqMan Gene Expression Assay primer and probe sets (PE Applied Biosystems, Foster City, CA). Thermal cycling conditions were as follows: a precycling period of 1 min at 95°C followed by 40 cycles of denaturation at 95°C for 15 s and annealing/extension at 60°C for 1 min. Expression levels of each ISG are expressed as a ratio with respect to β-actin levels.
+ Open protocol
+ Expand
7

RNA Extraction and Gene Expression Analysis in Bermudagrass

Check if the same lab product or an alternative is used in the 5 most similar protocols
For RNA extraction, 0.1 g bermudagrass leaves were sampled after 12 h treatment, and Trizol reagent (Invitrogen, Carlsbad, CA, USA) was used to extract the total RNA [67 (link)]. The RNA was then reversed to cDNA by M-MLV reverse transcriptase (Promega, Madison, WI) and oligo (dT) primer according to the operation manual. The gene expression was analyzed by two-step RT-PCR procedure with StepOnePlus Real-Time PCR Systems (Applied Biosystems, USA). SYBR Green (Toyobo, Osaka, Japan) was used as fluorescent dye and Real-time PCR Master Mix (Toyobo) was used for the reaction according to the operation manual. To quantify the gene expression, the Actin gene of bermudagrass was used as internal control, and the comparative Ct method was used to calculate the relative quantity of the target gene [71 (link)]. The primers of the specific genes are listed in Table 1.
+ Open protocol
+ Expand
8

Quantifying Airway Mucin Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the lung after OVA challenge with an RNeasy Mini Kit (n = 5 per group; QIAGEN, MD). cDNA was generated using a SuperScript III First-Strand Synthesis System (Thermo Fisher Scientific). Quantitative real-time RT-PCR was performed using a TaqMan probe set for Muc5ac (Mm01276718-m1; Applied Biosystems, CA) and Realtime PCR Master Mix (Toyobo, Japan) with a Prism 7900HT Real-Time PCR System (Applied Biosystems, CA). Expression of Muc5ac was determined relative to the expression of GAPDH.
+ Open protocol
+ Expand
9

TfR1 mRNA Expression in Rat Brain Regions

Check if the same lab product or an alternative is used in the 5 most similar protocols

TfR1 mRNA expression in various brain regions, including the hindlimb sensory cortex, hippocampus, and thalamus (n = 3 rats/group) was determined by RT-PCR. RNA was extracted from tissue with TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions, and 20 μg were treated with 10 U DNaseI (Takara Bio, Otsu, Japan) for 30 min at 37 °C. cDNA was synthesized using oligo dT primer, and 1 μl was added to the reaction containing 27.5 μl Real-Time PCR Master Mix(TOYOBO), 15 pmol of primers, and 7.5 pmol TaqMan probe, for a total volume of 30 μl. Primers and probes for TfR1 and ferritin (Fn) were designed with Primer Premier 5.0 software and synthesized by Shenggong Biotechnology (Shanghai, China). The sequences were as follows: Tfrc-F, CGT GGA GAC TAC TTC CGT GC, and Tfrc-R, GCC AGA GCC CCA GAA GAT GTG; GAPDH-F, CGGCAAGTTCAACGGCACAG, and GAPDH-R CCATGGTGGTGAAGACGCCA.
+ Open protocol
+ Expand
10

Quantitative Real-Time PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from liver samples using a PureLink RNA Mini Kit (Thermo Fisher Scientific). RNA quality was then verified using electrophoresis, and concentrations were measured using an Oubit 3.0 fluorometer (Thermo Fisher Scientific). Thereafter, the extracted RNA was treated with DNA-Free (Thermo Fisher Scientific) to remove contaminating DNA, and 2-μg samples were subjected to reverse transcription using a PrimeScript™ RT reagent Kit (Takara Bio, Shiga, Japan). Quantitative real-time RT-PCR was carried out using a StepOne Plus Real-Time PCR System (Thermo Fisher Scientific) with SYBR green (Toyobo, Osaka, Japan) or Realtime PCR Master Mix (Toyobo). Values were normalized to mouse GAPDH expression (Pre-Developed TaqMan assay reagents, Thermo Fisher Scientific). The primers used are listed in Table 2.

Primers used for real-time PCR.

Table 2
IL-1βForwardCTACAGGCTCCGAGATGAACAAC
ReverseTCCATTGAGGTGGAGAGCTTTC
IL-6ForwardCTGCAAGAGACTTCCATCCAGTT
ReverseGAAGTAGGGAAGGCCGTGG
p67 phoxForwardCAGACCCAAAACCCCAGAAA
ReverseAAAGCCAAACAATACGCGGT
p47phoxForwardATCCTATCTGGAGCCCCTTGA
ReverseCACCTGCGTAGTTGGGATCC
p22 phoxForwardGGCCATTGCCAGTGTGATCT
ReverseGCTCAATGGGAGTCCACTGC
collagen α1ForwardATGGATTCCCGTTCGAGTACG
ReverseTCAGCTGGATAGCGACATCG
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!