The largest database of trusted experimental protocols

Primescript rt reagent kit with gdna eraser perfect real time

Manufactured by Takara Bio
Sourced in Japan, China, United States

The PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time) is a laboratory equipment product designed for reverse transcription and real-time PCR. It includes a gDNA Eraser component for the removal of genomic DNA contamination prior to reverse transcription.

Automatically generated - may contain errors

266 protocols using primescript rt reagent kit with gdna eraser perfect real time

1

Herbal Formula Modulates Inflammatory Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
All herbs in QYSXD and the decomposed components were purchased from Tianyin Tianjiang Pharmaceutical Co., Ltd. (Jiangyin, Jiangsu Province, China) and conformed to the standards of the Chinese Pharmacopoeia. The decoction included 45 g of Astragalus membranaceus (Fisch.) Bunge; 30 g of Pseudostellaria heterophylla (Miq.) Pax; 15 g each of Rehmannia glutinosa (Gaertn.) Steud., Atractylodes macrocephala Koidz., Persicae semen, and Ligusticum chuanxiong Hort; and 20 g each of Euphorbia humifusa Willd. and Kummerowia striata (Thunb.) Schindl. DSS (MW 36,000–50,000 Da) was obtained from MP Biomedicals (Irvine, California, USA). LPS was obtained from Sigma-Aldrich Corp. (St. Louis, MO, USA). A PrimeScriptRT Reagent Kit with gDNA Eraser (Perfect Real Time) and SYBR® Premix Ex Taq™ II were purchased from TaKaRa Bio Inc. TRIzol was obtained from Invitrogen Scientific Co., Ltd. (Waltham, Massachusetts, USA). Antibodies against Drp1, FIS1, caspase-1, light chain 3 (LC3), and β-actin were purchased from Servicebio Corp. (Wuhan, China). Enzyme-linked immunosorbent assay (ELISA) kits for RIP1, RIP3, NLRP3, IL-1β, and IL-18 were purchased from Sigma-Aldrich Corp. Dihydroethidium (DHE) for ROS analysis and 4′,6-diamidino-2-phenylindole (DAPI) were purchased from Servicebio Corp. (Wuhan, China).
+ Open protocol
+ Expand
2

RNA Extraction and RT-PCR Analysis of Rice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from various rice tissues using Trizol reagent (Tiangen, Beijing, China), and analyzed with a Nanodrop 1000 spectrophotometer (Thermo Scientific, UT) for assessment of quality and quantity. For RT-PCR, first-strand cDNA was reverse transcribed from total RNA with the PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time; TaKaRa). Real-time RT-PCR was performed with iQ SYBR Green Supermix (Bio-rad), using the real-time PCR system (Bio-Rad C1000 CFX96). The rice actin gene was used as an internal control. Primers used to quantify the expression of OsTKPR1 are listed in Additional file 7: Table S4.
+ Open protocol
+ Expand
3

RNA Extraction and qRT-PCR Analysis of Cotton and Arabidopsis

Check if the same lab product or an alternative is used in the 5 most similar protocols
We extracted total RNA from the roots and leaves of cotton plants as well as from the leaves of GaRPL18-overexpressing A. thaliana and WT plants using the RNAprep Pure Plant Kit. The RNA was used to prepare cDNA with the PrimeScript™ RT Reagent Kit with gDNA Eraser (Perfect Real Time; Takara). The Gahistone3 (Cotton_A_11188) and ubiquitin10 (accession: At4g05320) genes were used as internal controls for cotton and A. thaliana, respectively. We designed all qRT-PCR primers with the Primer Premier 6.0 program (Table 1). Diluted cDNA was used as the template for the qRT-PCR, which was conducted with SYBR® Premix Ex Taq™ (Tli RNaseH Plus; Takara) and an ABI 7900 qRT-PCR System (Applied Biosystems, CA, USA). The three-step method involved the following PCR conditions: 40 cycles of 95 °C for 30 s, 95 °C for 5 s, and 60 °C for 30 s. We analyzed the dissociation curves for each reaction and used the 2−ΔΔCT method [44 (link)] to calculate the expression level of each target gene. All reactions were conducted with at least three biological replicates.
+ Open protocol
+ Expand
4

Immune Response Profiling of HCMV Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
DEFs in 12-well plates were infected with BAC-G or ΔUS10 at an MOI of 2 or mock infected. Total RNA was collected and extracted at 6, 12, and 18 h.p.i. Reverse transcription was performed according to the instructions of the PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time, TaKaRa). The cDNAs were used as templates for real-time quantitative PCR. The relative transcription levels of immune-related genes were calculated using the 2−ΔΔCt method67 (link). In addition, activation of TLR3 in DEFs was accomplished by poly(I:C)-transfection using Lipofectamine™ 3000 Transfection Reagent.
+ Open protocol
+ Expand
5

Quantitative RNA Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total tissue RNA was extracted using the RNAiso Plus reagent (Takara Bio, Kusatsu, Japan). RNA concentration and purity were assessed with a Nano Drop 2000 system (Thermo Fisher, Carlsbad, USA). Total RNA was reverse transcribed using the PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time) (Takara Bio, Kusatsu, Japan). Real‐time quantitative polymerase chain reaction (qPCR) was performed using SYBR® Premix Ex Taq™ II (Tli RNaseH Plus) (Takara Bio, Kusatsu, Japan). The primer sequences were shown in Additional file 1. The PCR reactions were performed on an ABI 7500 Fast system (Life Technologies, Carlsbad, USA). Gene expression was calculated relative to that of ACTB using the 2 − △△Ct method.
+ Open protocol
+ Expand
6

RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol reagent (TaKaRa, Japan) following the manufacturer's protocol. A PARIS Kit (Ambion, USA) was used to harvest the cytoplasmic and nuclear cell lysates. A PrimeScript RT Reagent Kit with gDNA Eraser (Perfect Real Time) (TaKaRa, Japan) was used to synthesize cDNA. An iTaq Universal SYBR Green Supermix Kit (Toyobo, Japan) was used for cDNA quantification, according to the manufacturer's protocol. All primers for RT-PCR and real-time qPCR are listed in Table S4.
+ Open protocol
+ Expand
7

Tissue-Specific mRNA Expression Analysis in Qinchuan Cattle

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fourteen tissues were obtained from three adult Qinchuan cattle. Total RNA was extracted from the tissues using a Total RNA kit (Tiangen, Beijing, China) and then reverse-transcribed using a PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time) (TaKaRa, Dalian, China). cDNA from reverse transcription of individual animal samples for each tissue was pooled for qPCR which was performed using a SYBR Green PCR Master Mix kit (TaKaRa, Dalian, China) and 7500 System SDS V 1.4.0 (Applied Biosystems, USA). All of the primers used in the real-time PCR experiment are listed in Supplementary Table S1. The data were normalized against those obtained for the housekeeping gene, β-actin (ACTB), which was used as an endogenous control gene. The relative expression levels of the target mRNAs were calculated using the 2−ΔΔCt method52 (link).
+ Open protocol
+ Expand
8

Transcriptional Analysis of A. pasteurianus

Check if the same lab product or an alternative is used in the 5 most similar protocols
A. pasteurianus strains were inoculated in LYSE medium at 30 °C with vigorous agitation for 12 h. RNA was extracted using SV Total RNA Isolation System (Promega, Madison, WI, USA), and then reverse-transcribed using PrimeScript™ RT Reagent Kit with gDNA Eraser (Perfect Real Time) (TaKaRa, Dalian, China) and four specific primers alsDdw1, alsS1dw1, alsS2dw1, and gyrAdw1. Real-time PCR assays were performed in triplicates on the Applied Biosystems ABI 7500 Real-time PCR System using TB Green® Premix Ex Taq™ II (Tli RNaseH Plus) (TaKaRa, Dalian, China). The relative transcriptional levels of target genes were calculated using the 2−ΔΔCt method, and the gyrA gene was used as the reference gene.
+ Open protocol
+ Expand
9

Quantitative PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted via TRIzol reagent (Invitrogen), and reverse transcription was performed immediately using a PrimeScript™ RT Reagent Kit with gDNA Eraser (Perfect Real Time; TaKaRa Bio). Then, SYBR® Premix Ex Taq (RR420A, TaKaRa Bio) was employed for q‐PCR analysis in a 20‐μL reaction system according to the manufacturer's instructions. Each sample was amplified in triplicate and processed on an Applied Biosystems real‐time PCR machine (7500, Foster City, CA, USA). The fold change in gene expression was analysed using an I7500 real‐time detection system (Applied Biosystems). The primers used for qRT‐PCR were as follows: HMGCR: F: TGATTGACCTTTCCAGAGCAAG, R: CTAAAATTGCCATTCCACGAGC; P21: F: TGTCCGTCAGAACCCATGC, R: AAAGTCGAAGTTCCATCGCTC; and beta‐actin: F: CATGTACGTTGCTATCCAGGC, R: CTCCTTAATGTCACGCACGAT.
+ Open protocol
+ Expand
10

Gene Expression Analysis in Plant Organs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA and miRNA were extracted from organ samples using the EASYspin Plus Plant RNA Kit (Aidlab, Beijing, China) and the EASYspin Plant microRNA kit (Aidlab, China), respectively. RNA quantity was evaluated using NanoDrop 2000C Spectrophotometer (Thermo Scientific, Waltham, MA, USA). RNA integrity was evaluated using a 1.2% agarose gel. Reverse transcription of total RNA was performed using the PrimeScript™ RT reagent kit with gDNA Eraser (Perfect Real Time) (TaKaRa, Dalian, China). Gene specific primers were designed on NCBI (https://www.ncbi.nlm.nih.gov/tools/primer-blast/) (Table S6). SmUBQ10 was used as a reference gene. Reverse transcription of miRNA was performed using Mir-X miRNA First-strand synthesis Kit (Takara, Dalian, China). The primers were listed in Table S6. The qRT-PCR analysis was conducted in triplicate using TB Green™ Premix Ex Taq™ II (Tli RNaseH Plus) (TaKaRa, Dalian, China) on a CFX96TM real-time PCR detection system (Bio-Rad, Hercules, CA, USA). Relative gene expression was analyzed using the 2−ΔΔCt method [63 (link)]. One-way ANOVA was performed using IBM SPSS 20 software to detect differential transcript abundance among organs and treatments.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!