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48 protocols using microscan walkaway

1

Antibiotic Susceptibility Testing Workflow

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Blood culture susceptibilities were performed on either BD Phoenix (BD Diagnostic Systems) or MicroScan Walkaway (Beckman Coulter) panels depending on the processing facility, whereas all urine cultures were processed on MicroScan Walkaway panels. Granular minimum inhibitory concentration (MIC) data were lacking for many isolates reported only as “susceptible” in our EMR, and we often had to infer susceptibility for oral antibiotics (eg, cephalexin and amoxicillin) based on surrogate intravenous antibiotics reported on the panel (eg, cefazolin and ampicillin, respectively). Because of this limitation, we preplanned an analysis limited to isolates confirmed to be susceptible by current Clinical and Laboratory Standards Institute (CLSI) breakpoints (see Sensitivity Analyses section).
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2

Antibiotic Susceptibility Testing Workflow

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Blood culture susceptibilities were performed on either BD Phoenix (BD Diagnostic Systems) or MicroScan Walkaway (Beckman Coulter) panels depending on the processing facility, whereas all urine cultures were processed on MicroScan Walkaway panels. Granular minimum inhibitory concentration (MIC) data were lacking for many isolates reported only as “susceptible” in our EMR, and we often had to infer susceptibility for oral antibiotics (eg, cephalexin and amoxicillin) based on surrogate intravenous antibiotics reported on the panel (eg, cefazolin and ampicillin, respectively). Because of this limitation, we preplanned an analysis limited to isolates confirmed to be susceptible by current Clinical and Laboratory Standards Institute (CLSI) breakpoints (see Sensitivity Analyses section).
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3

Automated Antibiotic Susceptibility Profiling

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Antimicrobial susceptibility tests were performed by the broth microdilution method using the MicroScan WalkAway (Beckman Coulter) automated system. The tested antibiotics varied depending on the hospital where each sample was collected. Susceptibility breakpoints were interpreted according to the recommendations of the EUCAST 2021 guidelines (https://www.eucast.org/clinical_breakpoints/). Carbapenemase production was confirmed upon admission to the hospital using different methods. Cefiderocol was tested using MIC test strips (Liofilchem MTS).
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4

Microbial Identification from Clinical Samples

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One or several samples were obtained from tissue, aspiration fluid, synovial fluid, and the drain. All samples were sent to the microbiology laboratory. Standard culture was performed at first. If samples were not cultured using standard culture methods, an enrichment culture method was performed using broth culture medium for 5 days according to a previous study [18 ]. Briefly, standard culture was performed using 5% sheep’s blood agar plates containing peptone and sodium chloride. The enrichment culture comprised semi-solid Gifu anaerobic medium containing peptone, soy peptone, protease peptone, beef extract, yeast extract, liver extract, glucose, starch, l-tryptophan, l-cysteine hydrochloride, thioglycolic acid sodium salt, l-arginine, vitaminK1, hemin, potassium dihydrogen phosphate, and sodium chloride. The standard culture method was conducted for 24 h at 35°C/5% CO2. Enrichment culture was performed for 5 days at 35°C in ambient air. When the enrichment culture was negative, it was identified as culture-negative. Bacteria were identified by analysis of biological properties using MicroScan WalkAway and a combo panel (Beckman Coulter, Brea, CA). The possibility of tuberculous, fungal, or viral infection was also investigated.
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5

Pneumococcal Isolates from Hokkaido, Japan

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In total, 351 clinical isolates of S. pneumoniae isolated between December 2018 to February 2019 and stocked in Hokkaido Laboratory, SRL, Inc. (Sapporo, Japan) were analyzed. The clinical samples were from the patients who visited the community clinics and hospitals of otolaryngology, pediatrics, and internal medicine. Analysis of multiple isolates derived from the same patients was avoided. The laboratory serves almost all areas of Hokkaido prefecture, but the strains used were collected mainly from the Sapporo district. Identification of S. pneumoniae was carried out using MicroScan WalkAway (Beckman Coulter, Tokyo, Japan).
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6

Antibiotic Susceptibility Testing Protocol

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Antibiotic susceptibility testing was preliminary performed using the Vitek2® system (BioMérieux, Marcy l’Etoile, France) or MicroScan Walkaway (Beckman, United States) at the participating hospital laboratories, and subsequently by the broth microdilution method using commercially available microplates (MERLIN Diagnostika GmbH, Germany). Discrepant results were resolved by testing individual isolates with the disk diffusion method. Results were interpreted according to the EUCAST breakpoints (version 11.0, 2021; see footnote 1).
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7

Determination of TZP Susceptibility

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MIC values of TZP were determined by two methods: (i) the semiautomatic system MicroScan WalkAway (Beckman Coulter, USA), which is the routine method used in many hospitals for the determination of the susceptibility profile, and (ii) TZP gradient strips (Liofilchem, Italy) following the manufacturer’s instructions. All experiments were repeated in three separate experiments, using daily freshly prepared plates and inocula. Clinical breakpoints were established according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST) (24 ). Hence, isolates with TZP MICs of ≤8 mg/L were categorized as susceptible, while those with MICs of >8 mg/L were categorized as resistant.
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8

Rapid Diagnostics for Bacteremia

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All processes were performed by trained technicians using both systems, according to the same workflow after a BC bottle was flagged as positive: (i) Gram stain and subculture on blood agar and chocolate agar, (ii) identification directly from the pellet by MALDI-TOF mass spectrometry (Bruker, Germany) (25 (link)), (iii) rapid disc diffusion antibiogram, and (iv) final AST by a semiautomated microdilution system (MicroScan WalkAway; Beckman Coulter, USA). Gram stain, MALDI-TOF mass spectrometry, and AST results were communicated to the attending physician immediately if the microorganism was not considered to be a contaminant and if this was the first bacteremia episode for that patient.
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9

Antimicrobial Susceptibility Profiling

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Antimicrobial susceptibility was determined by minimal inhibitory concentrations by using the MicroScan WalkAway® -automated system (BECKMAN COULTER, Inc., Brea, CA, United States) according to the manufacturer’s instructions. The antibiotics tested were ticarcillin, aztreonam, ceftazidime, cefepime, ampicillin–sulbactam, piperacillin–tazobactam, imipenem, meropenem, amikacin, gentamicin, tobramycin, levofloxacin, ciprofloxacin, trimethoprim–sulfamethoxazole, fosfomycin, colistin, minocycline, and tigecycline. Additionally, resistance to ampicillin, cefotaxime, chloramphenicol, and nalidixic acid was determined by disk diffusion assays (Becton Dickinson, Sparks, MD, United States). All results were interpreted according to the CLSI guidelines (Wayne, 2017 ). Multidrug resistance status was attributed to those isolates resistant to at least one agent of three or more different antimicrobial categories, including resistance to β-lactamase inhibitors (Magiorakos et al., 2012 (link)).
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10

Antimicrobial Susceptibility Testing of Bacteria

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All specimens were subjected to culture tests with MicroScan WalkAway (Beckman Coulter, Inc., Brea, CA, USA). Then, drug susceptibility tests for the detected bacteria were performed. In this study, the drugs examined were ampicillin and first-generation (cefaclor and cefazolin), second-generation (cefmetazole, cefotiam, and flomoxef), and third-generation (cefcapene pivoxil, cefdinir, cefditoren pivoxil, cefixime, cefotaxime, ceftazidime, ceftriaxone, and sulbactam/cefoperazone) cephalosporins. The study design and protocol were approved by the Ethics Review Committee of Nippon Medical School (approval number: R1-08-1178), and a written informed consent was obtained from all patients.
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