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15 protocols using cyclinb

1

Western Blot Analysis of Cellular Proteins

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Total protein was collected as previously described. Cell lysates were resolved by SDS-PAGE, and proteins were electro transferred to polyvinylidene fluoride membranes (Millipore, USA). The PVDF membranes were blocked with 10% nonfat milk (Solarbio, Beijing, China). The primary antibodies used included MUS81 (1:200 dilution, Santa Cruz, Texas, USA), β-actin (1:3000 dilution, Abcam, MA, USA), pH2AX (1:400 dilution, CST, MA, USA), Cyclin B (1:3000 dilution, Abcam, MA, USA), CHK1 (1:200 dilution, Santa Cruz, Texas, USA), CDC25C (1:200 dilution, Santa Cruz, Texas, USA ) , pCHK1(1:1000 dilution, CST, MA, USA), pCDC25C(1:1000 dilution, CST, MA, USA), RAD51(1:3000 dilution, Abcam, MA, USA), BCL2(1:3000 dilution, Abcam, MA, USA), and BAX (1:3000 dilution, Abcam, MA, USA).
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2

Immunofluorescence Analysis of MUS81 and CyclinB

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For immunofluorescence studies, 5×105 cells were seeded in 24-well plates on glass coverslips. Olaparib (5 μmol/l) was added to cells, and a well without Olaparib addition was used as a control. The cells were cultured for 48 hours. After the cells adhered, they were washed with PBS and fixed with 4% formaldehyde at room temperature. The slides with the fixed cell slides were washed with PBS, and then methanol and acetone were added at a 1:1 ratio, which was followed by blocking with 1% BSA. The cells were then incubated with antibodies against MUS81 (1:200 dilution, Santa Cruz, Texas, USA) and CyclinB (1:200 dilution, Abcam, MA, USA) overnight at 4°C. After washing, the cells were labeled with Alexa Fluor 488-conjugated secondary antibody (Invitrogen, CA, USA) and examined under a fluorescence microscope (Leica, China, SP5).
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3

Western Blot Analysis of Liver Proteins

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Liver samples were homogenized in Radio Immunoprecipitation Assay (RIPA) lysis buffer with phenylmethanesulfonyl fluoride (Beyotime, Shanghai, China), incubated on ice for 1 hr and centrifuged for 15 min. at 12,000 × g at 4°C. Supernatants were collected. The protein concentration was measured by bovine serum albumin assay (Cowin Biotech, Beijing, China). For western blotting, 100 μg total protein per lane was used to examine the expression level of the target protein. Mouse anti‐p21 (Santa Cruz, Dallas, TX, USA), rabbit anti‐Pten, cyclin D1, CDK1, CDK2, CDK4, cyclin A, cyclin B and AKT (Abcam, Cambridge, CA, USA) antibodies were used. ECL reagent was used for chemiluminescence detection. Signal intensities were quantified and normalized to the histone H3 or GAPDH intensity using ImageJ software.1
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4

Molecular Profiling of Cell Cycle Regulators

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SAS cells were lysed, separated by 6–15% SDS-PAGE, transferred to a nitrocellulose membrane and then blocked with skimmed milk. GAPDH expression served as the protein loading control. The following antibodies were used for immunoblotting (IB): anti-GAPDH, cyclin B, cyclin D1, CDK2, CDK4, and CDK1 were obtained from Abcam (Cambridge, MA, USA); anti-LC3 and ATG5 were obtained from Abgent (San Diego, CA, USA); anti-p53 and p27 were obtained from GeneTex (Irvine, CA, USA); anti-p62/SQSTM1 was obtained from MBL (Nagoya, Japan); anti-PARP, cytochrome C, Bax, Beclin 1, and cyclin E were obtained from Cell Signaling Technology (Ipswich, MA, USA); anti-phospho-IkBα (S32/S36) was obtained from R&D Systems (Minneapolis, MN, USA); anti-active caspase 3 was obtained from BioVision (San Francisco, CA, USA); anti- Bcl-2 and cyclin A were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA); and anti-p21 was obtained from Thermo (Waltham, MA, USA). Z-VAD-FMK and 3-methyladenine (3-MA) was obtained from Sigma-Aldrich (St. Louis, MO, USA). After mixing with 4× sample dye, the samples were heated at 95 °C for 5 min, placed on ice for 5 min, and subjected to a Western blot analysis.
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5

Western Blot Analysis of Cell Cycle Regulators

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After indicated treatment, cells were harvested and lysed in NP-40 lysis buffer containing protease inhibitor mixture (Roche, Penzberg, Upper Bavaria, Germany) and phosphatase inhibitors. Protein concentrations were measured using Pierce BCA protein assay kit. Equal amount of proteins were separated by 4% to 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis and were subsequently transferred to a polyvinylidene fluoride membrane. Membrane was blocked with 10% skim milk in Tris-buffered saline (TBS), incubated with primary antibodies diluted in 1% skim milk in TBS at 4°C overnight before incubation of secondary antibodies. Proteins were visualized with the Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE) and quantified using ImageJ version 1.48.] Normalized values were expressed as a ratio of the mean expression level of controls. The following antibodies were used in this study: proliferating cell nuclear antigen (PCNA; 1:200; Abcam), cyclin A (1:200; Abcam), cyclin B (1:100; Abcam), β-catenin (1-400; Sigma), β-tubulin (1:1000; Sigma).
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6

Cryptotanshinone Signaling Pathway Study

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Cryptotanshinone (CPT, purity>98%, molecular weight 296.36) was obtained from National Institutes for Food and Drug Control (Beijing, China). 2.964 mg CPT was dissolved in 1 ml dimethyl sulfoxide (DMSO, Sigma, USA) to make a 10 mM stock solution which was then added to the medium at the indicated concentrations. The methyl thiazolyl tetrazolium (MTT) was obtained from Keygen (Nanjing, China). RPMI-1640 medium and 0.05% trypsin were from Gibco (USA) and Fetal bovine serum was from Corning Cell Gro (Australia). Lipofectamine® 2000 was from Invitrogen (Grand Island, NY, USA). GPER specific agonist G-1 and antagonist G-15 were from Cayman Chemical (Michigan, USA). The following antibodies were used: GPER, PI3K(p85), cyclin A, cyclin B, cyclin D, CDK2 (Abcam, USA), phospho-Akt (p-AKT, Ser473, Cell signaling, Boston, MA, USA). GPER siRNA, non-target siRNA and PI3K inhibitor LY294002 were obtained from Santa Cruz Biotechnology (Texas USA). Fluorescein-Conjugated Goat anti-Rabbit IgG(H + L) was from ZSGB-BIO (Beijing, China) and DAPI was from Solarbio (Beijing, China).
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7

Protein Expression Analysis in Lung Cell Lines

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In order to create protein lysates from MRC-5, A549, Calu-3, H1975, and H2228, protease and phosphatase inhibitors were added to radioimmunoprecipitation assay (RIPA) lysis solution (Thermo Fisher Scientific). The bicinchoninic acid (BCA) protein assay kit (Thermo Fisher Scientific) was used to measure the amounts of proteins. After sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) for electrophoresis, polyvinylidene fluoride (PVDF) membranes (Millipore, Burlington, MA, USA) were transferred. Immunoblotting was carried out using primary antibodies against CDC25C, Bax, Bcl-2, LC3 I, LC3 II, p62, cyclin B, CDK1-Y15, CDK1, c-PARP, and GAPDH (all at 1:1,000; Abcam, Cambridge, MA, USA). Post-washing thrice with tris-buffered saline with Tween 20 (TBST), membranes were processed for band visualization using an enhanced chemiluminescence (ECL) kit (Thermo Fisher Scientific). Using the ChemiDoc system from Bio-Rad (Hercules, CA, USA), the intensities of the protein bands were recorded and subsequently analyzed with ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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8

Protein Extraction and Western Blot Analysis

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Total protein was extracted from the cells using the M-PER mammalian protein extraction reagent or from tissues using the T-PER tissue protein extraction reagent (Pierce, IL, USA). Equal amounts of protein (12 μg per lane) as estimated by a bicinchoninic acid protein assay kit (Pierce, IL, USA) were separated by 11% SDS-PAGE and then transferred onto nitrocellulose membranes. The blots were probed with rabbit monoclonal antibodies against UbcH10 (1:200), KIAA0101 (1:500), BubR1 (1:600), Mad2 (1:250), CDC25(1:400), CDK1 (1:300), CDK7 (1:500), CyclinB (1:350) and β-actin (1:1000) (Abcam, CA, USA), followed by incubation with secondary HRP-conjugated goat anti-rabbit antibody (Abcam, CA, USA). After a washing step, the bands were detected by chemiluminescence and imaged on X-ray films. β-actin was used as an endogenous reference for normalization.
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9

Protein Isolation and Western Blotting

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Total protein was isolated from liver tissue by the RIPA (Radio Immunoprecipitation Assay) lysate (Beyotime, Guangzhou, China). Protein bands were separated by 10% SDS-PEGA (sodium dodecyl sulfate polyacrylamide gel electrophoresis) (Beyotime, Guangzhou, China) and transferred by the PVDF (polyvinylidene fluoride) membrane (Roche, Shanghai). Using 5% defatted milk (Beyotime, Guangzhou, China) blocked nonspecific binding, and the primary antibody was incubated at 4 °C overnight. Antibodies against GLI1 and GLI2 were purchased from GeneTex; Cyclin D and Cyclin B from Abcam; and Bub1b, Cdc20 and CDK2 from Poteintech.
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10

Immunohistochemical Analysis of NBS1 and CyclinB

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The monoclonal antibody NBS1 (1:200 dilution, Abcam, MA, USA) and CyclinB (1:200 dilution, Abcam, MA, USA) are diluted with PBS at 1:50 were used to perform immunohistochemistry (IHC). Briefly, each 4-μm-thick paraffin-embedded section was dewaxed and hydrated, followed by endogenous peroxidase inhibition with methanol containing 0.3% H2O2. After antigen retrieval and cooling, the sections were blocked with 1% BSA and incubated overnight at 4 °C with primary antibody. The following day, the sections were incubated with HRP-conjugated secondary antibody (Shanghai Long Island Biotech, Shanghai, China) for 1 hour at room temperature, followed by diaminobenzidine treatment and hematoxylin counterstaining. Slides were visualized and photographed under light microscopy at 400 ×  (Leica, China, SP5).
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