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18 protocols using agilent 6890 series

1

Quantitative Analysis of Caprylic Acid by GC

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The FAME was analyzed by gas chromatography using an Agilent 6890 Series chromatograph (Agilent Technologies, Santa Clara, CA, USA) equipped with a split-splitless injector operating in split mode with a 20:1 split ratio at 250 °C, a SGE BPX70 column, 25 m × 0.32 mm internal diameter, a film thickness of 0.25 µm (Trajan Scientific, Australia), and a flame ionization detector at 280 °C with hydrogen at 40 mL/min, air at 450 mL/min, and nitrogen as the auxiliary gas at 25 mL/min. The analyses were run using nitrogen as the carrier gas at 10 psi. The oven temperature was held for 5 min at 100 °C, followed by an increment of 4 °C/min up to 240 °C, and then held for 20 min. A calibration curve for caprylic acid (R2 = 0.99) was separately constructed to quantify its concentration.
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2

Quantification of Target PCBs using GC-μECD

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Target PCBs were determined using gas chromatograph (Agilent 6890 Series, Agilent, Palo Alto, CA) equipped with micro electron capture detector. Separation was performed on a DB-5 capillary column (60 m length, 0.25 mm i.d., 0.25 μm film thickness, J&W Scientific, USA). The initial oven temperatures was set at 80 °C for 2 min then increased to 185 °C at a rate of 30 °C min−1 (3 min), then at 1.5 °C min−1 to 230 °C (held for 15 min) and finally to 270 °C at a rate of 5 °C min−1 (held for 25 min). Nitrogen as carrier gas was used at 1.8 mL min−1 flow rate. Injector was set at 270 °C and split-less mode. Detector was set at 300 °C. Confirmation of target PCB congeners were carried out using a Varian Gas Chromatograph CP-3800 (Varian, CA, USA) coupled to ion trap mass spectrometry detector (Varian Saturn 2000, Varian, CA, USA). The mass spectrums were acquired in MS/MS mode. 2 μL of each sample was injected in a programmable temperature vaporizing (PTV) injector (split-less mode). A VF-5MS capillary column (55 m length, 0.25 mm i.d. and 0.25 μm film thicknesses, Factor Four ®, Varian, Palo Alto, CA, USA) was employed. The GC oven was programmed as: initial temperature 100 °C for 2 min then to 200 °C (held for 3 ° min) at a rate of 30 °C min−1 and then to 230 °C (held for 15 min) at a rate of 3 °C min−1 and finally to 270 °C (held for 15 min) at a 5 °C min−1 [18 (link), 19 (link)].
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3

DIMBOA-Glc β-Glucosidase Activity Analysis

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LC-MS/MS analyses of DIMBOA-Glc β-glucosidase activity were performed as described in (Wouters et al., 2014 (link)). GC-MS analyses were performed in an Agilent 6890 series gas chromatograph (Agilent Technologies, Waldbronn, Germany) using an Agilent 19091S-433 capillary column (30 m × 0.25 mm × 0.25 μm), using 2 μL injection on splitless mode at 200°C. The temperature program was: 40°C for 3 min, a 10°Cmin−1 ramp to 130°C, a 60°Cmin−1 ramp to 300°C, held for 3 min. The total running time was 17.83 min.
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4

GC-MS Analysis of Phenolic Compounds

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The samples were analysed using an Agilent 6890 Series gas chromatograph coupled with an Agilent 5973 N mass selective detector (Agilent Technologies). A GC MEGA-5 MS (0.25 µm, 0.32 mm, 30 m) capillary column was used for chromatographic separation. The injection volume was 2 µL at 280 °C with a split flow of 5.7 mL/min and a split ratio of 2:1. Helium was used as the carrier gas (1 mL/min). The oven temperature program started at 90 °C (held for 8 min), then ramped up (10 °C/ min) to 100 °C (held for 18 min), and increased to 240 °C at a rate of 30 °C/min (held for 4.67 min) with a transfer line temperature of 280 °C. The ionisation energy was set at 70 eV, and the solvent delay was set at 7 min. The transfer line, MS Source, and MS Quad temperatures were 280, 230, and 150 °C, respectively. The MS analysis was carried out in SCAN (m/z 40–250) or SIM mode. Is the latter mode, the monitored ions (m/z) for PE were 77, 94, and 138, and PE-TMS were 151, 195, and 210, using 151 as the quantification ion. Ethyl benzoate (internal standard) presented a retention time of 12.5 min, and the chosen quantifier ion was 105 m/z in SCAN mode.
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5

Faecal Short-chain Fatty Acid Analysis

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Immediately after processing, faecal sample aliquots had three volumes of 1.68 mM heptanoic acid internal standard (IS) added per weight of faeces. Tubes were vortexed well, pH was measured and stored at −80 °C until analysis. When analysing microbial organic acid concentrations, aliquots were thawed on ice, vortexed well and centrifuged at 2095 xg for 5 minutes at 4 °C. Supernatants were transferred to microcentrifuge tubes which were centrifuged for a further 5 minutes at 15, 400 x g at 4 °C. 300 µL of supernatant was acidified with 10 µL 10% phosphoric acid and filtered with a Whatman PTFE 0.45 µm Mini-UniPrep tube. Filtrates were analysed via gas chromatography Agilent 6890 series.
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6

Fatty Acid Composition Analysis of Seed Oils

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The fatty acid composition of SO as well as the free ones of the HSO, obtained by CRL, was analyzed, by gas-liquid chromatography (GC), using Agilent 6890 Series (GC) system (Agilent Technologies, Wilmington, NC), equipped with computerized integration and data handling (GC ChemStation G2075AA, version A.09.03, Agilent) software and a flame ionization detector (FID). Samples of 1 μL were injected, using the split mode injection. The separation of the different FAMEs was performed on a HP-INNOWax polyethylene glycol fused capillary column (30 m × 0.25 mm, i.d. 0.25 μm film thickness, Agilent), with a flow rate of carrier gas (He) of 1 mL/min. The oven temperature was programmed as follows: 150°C during the first 1 min and then it increased to 200°C, at 10°C/min; the temperature was then increased to 220°C, at 1°C/min, and it was held for 5 min before a final increase to 225°C, at 1°C/min, where it was held for 5 min. The flow rates for the hydrogen and air were set at 40 and 400 mL/min, respectively. The split injector and FID temperatures were set at 220 and 230°C, respectively.
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7

GC-MS Analysis of Chemical Compounds

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GC–MS was performed on an Agilent 6890
series gas chromatograph
(Agilent Technologies, Santa Clara, CA, USA) coupled to an Agilent
5973 mass spectrometer detector. The capillary column used for chromatographic
separation was a fused silica DB-5 column (30 m × 0.25 mm ×
0.25 μm; Agilent). A 1 μL split/spitless injection (1:1
split) was made by an autosampler using a 10 μL syringe. The
inlet temperature was 250 °C. Helium was used as a carrier gas
with a constant flow of 1.5 mL/min. The oven temperature was initially
held at 80 °C for 1 min followed by an increase in temperature
at a rate of 6 °C/min until the oven temperature reached 280
°C and held at this temperature for 90 min. The mass spectrometer
detector was coupled to the GC via a transfer line heated at 280 °C
and operated in electron ionization (EI) mode at 70 eV. The total
run time was 124.338 min. The detector scan range was set to m/z 50–800.
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8

Quantitative Analysis of Deuterated Citrate

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Deuterated citrate (d4Citrate) was added to each sample to a final concentration of 0.1 mM as an internal standard. Metabolites were then extracted using cold methanol before being dried under vacuum desiccation. The samples were re-suspended in anhydrous pyridine containing the derivitisation agents methoxyamine hydrochloride followed by N-Methyl-N-trimethylsilyltrifluoroacetamide with 1% 2,2,2-Trifluoro-N-methyl-N-(trimethylsilyl)-acetamide, Chlorotrimethylsilane (MSTFA + 1%TMCS). GCMS was performed in pulsed splitless mode on a Hewlett Packard HP6890 series GC system with Agilent 6890 series injector and a 30 m long 250 µm diameter capillary column (Agilent, model number 19091s-433HP5MS) using a flow rate of 1 mL/minute, and a Hewlett Packard 5973 Mass selective detector. The acquisition was conducted in selective ion monitoring mode, the ion masses detected for citrate were: 273, 347, 375 and 465 and the corresponding heavy ions were 276, 350, 378 and 469. The dwell time for all of these ions was 50 ms.
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9

GC-MS Analysis of Samples

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Analysis of the samples (injection volume 1 μL) were performed using two GC-MS systems. The first system was composed of an Agilent 6890 Series GC system and an Agilent 5973 Network mass selective detector (MSD) (Agilent Technologies, Santa Clara, CA, USA). The second system was an Agilent 5975B inert MSD integrated to an Agilent 6890N Network GC (Agilent Technologies, Santa Clara, CA, USA). More information about the analytical columns, the temperature programs, and the conditions adopted in the MSD are reported in Supplementary Materials. Enhanced Data Analysis software was used for the analysis of the chromatograms, and NIST MS Search 2.0 software was used for compound identification.
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10

Quantifying Fatty Acid Profiles by GC-MS

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Fatty acid-PFB esters were analyzed using an Agilent 6890 series gas
chromatograph (Agilent Technologies, Wilmington, DE) equipped with a DB-FFAP
capillary column (30 m × 0.25 mm interior diameter, 0.25 mm film
thickness; J and W Scientific, Folsom, CA) according to the method of Pawlosky,
Sprecher, and Salem (41 (link)). Fatty
acid-PFB esters dissolved in hexane were injected with a splitless injection
technique. The GC oven temperature was programmed from 80°C to
185°C at 20°C/min then to 240°C at 10°C/min and held
for 30 min. The injector and transfer line were maintained at 250°C and
280°C, respectively. The negative chemical ionization source temperature
was 150°C. Methane was the ionization gas. Selected ion mode was used to
analyze fatty acids using the mass-PFB ion for PFB derivatives. The
m/z values for 2H-ALA and 2H-DHA were
291 and 337, respectively. Concentrations were determined by using calibration
equations that relate the fatty acid peak area:standard peak area ratio to a
fatty acid concentration.
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