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3 protocols using pikbαs32

1

Interrogating Cellular Signaling Pathways in Colorectal Cancer

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Approximately, 30 to 80 mg of nuclear or cytoplasmic protein that was isolated from SW480 colorectal cancer cells using NE-PER nuclear and cytoplasmic extraction kit (Thermo Scientific, Waltham, MA) was loaded and separated by SDS-PAGE, transferred to nitrocellulose membrane, and probed with the following antibodies overnight at indicated dilutions. pNFκB P65 S536, 1:1000, NFκB (P65), 1:1000, pGSK-3αS21βS9, 1:1000, pGSK3αY51βY47, 1:2000, GSK-3β, 1:1000, COX-2, 1:1000, pIKBαS32, 1:1000, IKBα, 1:1000, pIKKα/IKKβS176/180, 1:1000, IKKα/IKKβ, 1:1000, pAktS473, 1:2000, Akt, 1:2000, β-Catenin, 1:1000, pβ-CateninS33/37/T41, 1:1000 (Cell Signaling Technology, Danvers, MA); Each membrane was probed with P84 (Gene Tex, Irvine, CA) to ensure consistent loading of nuclear protein and β-actin, 1:5000 (Sigma, St. Louis, MO) to ensure consistent loading of cytoplasmic protein.
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2

Immunoblot and Immunoprecipitation of Key Signaling Proteins

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Immunoblot and immunoprecipitation were performed according to the standard procedures (Kim et al., 2018 (link)). The following primary antibodies were used: anti-HDAC6, TLR2, TLR4, and SIRT1 (ABclonal); anti-FcεRIβ, Lyn, GATA3, T-bet, JNK1, pJNK1T183/Y185, Tryptase, Chymase, BECN1, MyD88, TSG101, and Calnexin (Santa Cruz Biotechnology); anti-CXCL13 (R&D Systems); anti-CD163, FoxP3, TSLP, and MIP-2 (Abcam); anti-iNOS, pBECN1S14, COX2, ERK1/2, pERKT204, HDAC3, NFκB, AMPKα, pAMPKαT172, IKBα, pIKBαS32, p38MAPK, p-p38MAPKT180/Y182, and LC3(Cell Signaling Technology). The detailed information of primary antibodies is described in Supplemental Table S2.To isolate tissue lysates, tissue was frozen in liquid nitrogen to preserve protein structure and homogenized with RIPA buffer. After lysis, vortexing and centrifugation at 10,000 X g for 15 min at 4°C were followed. Supernatant was then obtained and used as tissue lysates for immunoblot and immunoprecipitation.
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3

Probing the mTOR Signaling Pathway

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Whole-cell extracts were prepared using 2X SDS buffer supplemented with fresh protease and phosphatase inhibitors. Equal volumes of protein were fractionated by SDS-PAGE and transferred to nitrocellulose membranes. The following antibodies were used: Akt, mTOR, p-mTORS2448, p-mTORS2481, ribosomal protein S6, phospho-ribosomal protein S6S235/236, Rictor, Raptor, TSC2, p-TSC2S939, NFκB p50, NFκB p65, IκBα, p-IkBαS32, and IKKα (purchased from Cell Signaling Technology, Danvers, MA). β-actin antibody was purchased from Sigma-Aldrich. Anti-rabbit secondary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Blots were developed using Western Lighting Plus ECL chemiluminescent reagents (Perkin Elmer, Waltham, MA) and Syngene G:Box Imaging System (Frederick, MD). Band quantification was performed using Syngene Genetools gel analysis software and band intensities normalized to β-actin intensity.
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