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11 protocols using af2030

1

Immunofluorescence Staining of VASA in OLCs

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For immunofluorescence staining, medium was removed and cell colonies were washed twice in PBS and then fixed in 4% PFA for 15 minutes. Cells were permeabilized by 0.1% Triton X-100 in PBS for 10 minutes at room temperature. Primary antibody (VASA, R&D Systems, AF2030) was diluted in 3% BSA-PBS, and colonies were incubated for 1 h at 37°C. Cells were washed twice in PBS. The secondary antibody, which was diluted in 3% BSA-PBS, was added to the cells and incubated for 20 minutes in a dark box at 37°C. Cells were washed again twice in PBS and 5% DAPI-PBS was added. Cells were washed again with PBS and mounted with CitiFluor (Science Services AF1, Glycerol/PBS solution). For negative controls, the primary antibody was (i) omitted or (ii) replaced by IgG isotopes. DAPI staining of the OLCs was performed in 5% DAPI-PBS for 5 minutes followed by two washes in PBS.
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2

Immunohistochemical Analysis of Germ Cell Markers

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Freshly collected tissues were fixed in 4% paraformaldehyde, embedded in paraffin, and sectioned for analysis using primary antibodies against Stra8 (rabbit polyclonal, ab49602; Abcam), Ddx4 (rabbit polyclonal ab13840, Abcam; goat polyclonal AF2030, R&D Systems), Sycp3 (rabbit polyclonal NB300-230, Novus Biologicals), Ser139-phospho-H2afx (mouse monoclonal 05–636, Millipore) or GFP (chicken polyclonal ab13970, Abcam; rabbit polyclonal ab290, Abcam). For IF, detection was performed using donkey anti-chicken Alexa Fluor 488 (Jackson Immuno), donkey anti-goat Alexa Fluor 647 or donkey anti-rabbit Alexa Fluor 546 (Molecular Probes) as secondary antibody16 (link). For IHC, detection was performed using biotin-conjugated anti-rabbit IgG (Santa Cruz Biotechnology) as secondary antibody for horseradish peroxidase-based DAB detection (Sigma-Aldrich). Images were captured using a Nikon E800/BioRad Radiance 2000 confocal microscope or a Nikon ECLIPSE TE2000-S microscope.
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3

Immunofluorescent Staining of Embryonic Sections

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Immunofluorescent staining of embryonic sections was carried out as described previously [50 (link)]. Briefly, whole embryos or cultured urogenital organs were fixed at 4°C overnight in 4% paraformaldehyde, paraffin embedded, and sectioned. Slides were then dewaxed, rehydrated, and antigen-retrieved by microwaving in citrate buffer (10mM sodium citrate, 0.05% Tween 20, pH6.0). After blocking, slides were incubated with primary antibodies at 4°C overnight. Slides were then incubated with donkey secondary antibodies conjugated to FITC, Rhodamine Red X or DyLight 649 (Jackson ImmunoResearch) and mounted with ProLong Gold Antifade reagent with DAPI (Life Technologies).
Primary antibodies against GATA4 (sc-25310, Santa Cruz Biotechnology), DAZL (ab34139, Abcam), SSEA1 (MAB4301, Millpore), MVH (AF2030, R&D Systems), GCNA (a gift from George Enders, University of Kansas Medical Center, Kansas City, KS) [51 (link)], SOX2 (ab97959, Abcam), NANOG (IHC-00205, Bethyl Laboratories), OCT4 (560186, BD), MILI (a gift from Gregory J. Hannon, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) [52 (link)], and SYCP3 (sc-33195, Santa Cruz Biotechnology) were used in the study.
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4

Immunohistochemical Analysis of Testes

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Whole testes were fixed with 4% paraformaldehyde, immobilized in paraffin and sectioned. After removal of paraffin, sections were stained at the following antibody concentrations: anti-LINE Orf1p (1:300), anti-IAP Gag (1:300), anti-MORC1 (1:100), anti-VASA (1:100, R&D Systems AF2030), stained with fluorescent secondary antibody and mounted with DAPI (4',6-diamidino-2-phenylindole). Slides were imaged by Confocal microscopy.
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5

Analyzing Gonadal Cell Proliferation

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Pregnant mothers were injected intraperitoneally (i.p.) with 20 mg/kg 5-ethynyl-2-deoxyuridine (EdU) to facilitate in vivo analysis of gonadal cell proliferation. Flow cytometry was performed as previously described [40 (link), 77 (link), 78 (link)]. Dissociated gonadal cells were stained using antibodies specific for SOX9 and AMH allowing identification of Sertoli cells and SOX9 (Millipore AB5535, diluted 1/300) and AMH (Santa Cruz sc-6886, diluted 1/200) staining intensity in the Sertoli cell population. Cell cycle was measured in Eedwt/wt, Eedwt/hypo and Eedhypo/hypo samples as previously described [77 (link), 78 (link)]. Germ cells were identified using an antibody specific for MVH (R&D Systems, AF2030 diluted 1/100; [77 (link), 78 (link)]).
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6

Immunofluorescence Staining of Stem Cell Markers

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The specimens were fixed in 4% paraformaldehyde, dehydrated with graded alcohols, cleared in xylene and embedded in paraffin wax. Serial sections (5µm) were deparaffinized, rehydrated and antigen retrieval (pH:9) was performed. The immunofluorescence staining was performed as previously described [18 (link)] The following antibodies and their dilutions were used: OCT-3/4 (sc-5279 and sc-8628, SantaCruz, 1:25), NANOG (AF1997, R&D systems, 1:25), SSEA-1 (MC-480, Developmental Studies Hybridome Bank at University of Iowa, 1:1), cKIT/CD117 (A4502, Dako, 1:100), VASA (AF2030, R&D systems, 1:20), H3K4me1 (ab8895, Abcam, 1:50), H3K9ac (ab10812, Abcam, 1:50), H3K27me3 (07-449, Millipore, 1:50), H3K4me3 (07-473, Millipore, 1:50), H3K9me2 (07-441, Millipore, 1:50), H3K9me3 (07-442, Millipore, 1:50), LSD-1 (ab17721, Abcam, 1:50), DHX38 (10098-2-AP, ProteinTech Group, 1:50), PRMT5 (sc-22132, SantaCruz, 1:25), BLIMP1 (9115S, Cell Signalling, 1:100) . The Alexa Fluor Series from Invitrogen were used as secondary antibodies (all 1:200). Images were taken using a Leica SP5 confocal microscope. Quantitative analyses were performed by counting cKIT/OCT4 and VASA/OCT4. Data are expressed as mean ± SD (Suppl Fig 2).
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7

Immunofluorescence Analysis of Mouse Embryos

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Mouse embryos were fixed in 4% PFA in PBS at 4°C, embedded in paraffin, sectioned at 5μm, and immunofluorescence performed as described previously [39 (link)]. Primary antibodies used for this study were anti-HMGCS2 rabbit monoclonal (1:50; ab137043, Abcam), anti-SOX9 sheep polyclonal (1:100; [40 (link)]), anti-MVH goat polyclonal (1:200; AF2030, R&D systems), anti-AMH goat polyclonal (1:200; sc6886, Santa Cruz), anti-AMH goat polyclonal (1:50; AF1446 R&D systems), anti-SYCP3 mouse monoclonal (1:100; ab97672, Abcam), anti-FOXL2 rabbit polyclonal (1:300; [41 (link)]) and anti-CYP11A1 rabbit polyclonal [42 (link)]. Secondary antibodies used were donkey anti-rabbit Alexa 488, donkey anti-rabbit Alexa 568, donkey anti-goat Alexa 488, donkey anti-goat Alexa 546, donkey anti-mouse Alexa 488, and donkey anti-sheep Alexa 647 obtained from Invitrogen and used at 1:300. Images were taken with a Zeiss LSM 510 Meta confocal microscope at the Australian Cancer Research Foundation Dynamic Imaging Centre for Cancer Biology, University of Queensland and with a Zeiss LSM800 confocal microscope at the Biological Optical Microscopy Platform (BOMP) at the Department of Anatomy and Neuroscience, The University of Melbourne.
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8

Immunohistochemical Analysis of VASA and 5meC

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Sections were dewaxed, rehydrated and antigen retrieval (pH:6) were performed. In order to block non-specific binding, alkaline phosphatase and endogenous peroxidase activity, sections were first blocked with 3% donkey serum, secondly were incubated with levamisole and finally treated with 2% H2O2. All sections were incubated with VASA (AF2030, R&D systems, 1:25) and 5meC (16233D3, Calbiochem, 1:50) antibodies. For detecting VASA antibody, sections were incubated with a secondary antibody alkaline phosphatase conjugated (705-055-147, Jackson Lab., 1:100). Finally sections were revealed by using EnVisionTM System, BCIP/NBT (Dako) and DAB.
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9

Germ Cell Protein Localization

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Whole testes were fixed with 4% paraformaldehyde, immobilized in paraffin and sectioned. After removal of paraffin, sections were stained at the following antibody concentrations: anti-LINE Orf1p (1:300), anti-IAP Gag (1:300), anti-MORC1 (1:100), anti-VASA (1:100, R&D Systems AF2030), stained with fluorescent secondary antibody and mounted with DAPI. Slides were imaged by Confocal microscopy.
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10

Protein Expression Analysis by Western Blotting

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Western blotting was performed according to standard procedures. In brief, 20 mg of frozen tissue per sample was used. Proteins were isolated by mechanical destruction of the tissue in a TissueLyser at 50 HZ (Qiagen, Hilden, Germany). The samples were denatured for 5 minutes at 95°C. Samples were then run on a 10% SDS-page gel in Tris HCl buffer, pH 8.8, and then semi-dry-blotted onto a PVDF membrane (150 mA for 1 h). Blocking of unspecific binding was achieved by incubating the membrane in 5% skim milk powder diluted in TBS for 1 h. Primary antibodies against VASA (#AF2030, R&D Systems; 1 : 2000) and β-actin (Santa Cruz, SC-1616-R; 1 : 5000) were diluted in blocking buffer. Membranes were incubated in primary antibody solutions for 16 hours at 4°C and then washed three times with blocking solution supplemented with Tween 20. After incubation with the horseradish peroxidase-coupled secondary antibody (1 h at 20°C) the membrane was washed again. Detection of bound antibody was performed using the Amersham ECL Western Blotting Detection Reagents Kit (RPN2106). Signals were detected and documented using the ChemoCam Imager (INTAS, Göttingen, Germany).
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