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6 protocols using p0141

1

Immunofluorescence Profiling of Cell-Cell Junctions

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Primary antibodies used include mouse anti-p120-catenin (1:500, BD Biosciences 610134), mouse anti-E-cadherin (1:200, BD Biosciences 610182) rat anti-CK8 (1:125, Developmental Studies Hybridoma Bank, Troma-1), rabbit anti-CK14 (1:10.000, Covance, PRB-155P), guinea pig anti-vimentin (1:400, Fitzgerald, 20R-VP004), rabbit anti-δ-catenin (EMD-millipore, 07–259), guinea pig anti-ARVCF (1:100, previously used in [33 ]), guinea pig anti-p0071 (1:100, previously used in [33 ]).
Secondary antibodies used were rabbit anti-guinea pig (DAKO, p0141), HRP conjugated rabbit anti-rat (DAKO p0450), poly HRP anti-rabbit (Immunologic, DPVR500HRP), poly HRP anti-mouse/rabbit/rat (Immunologic, DPVO500HRP), Alexa568 conjugated anti-mouse (1:500, Invitrogen, A11031) and Alexa488 conjugated anti-rabbit (1:500, Invitrogen, A11034).
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2

Western Blot Analysis of DNA Repair Proteins

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Anti-XRCC4 rabbit polyclonal antibody [47 (link)], anti-FLAG mouse monoclonal antibody (clone M2; F3165; Sigma-Aldrich; St. Louis, MO, USA), anti-Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) mouse monoclonal antibody (clone 6C5; MAB374;) and anti-LIG4 guinea pig polyclonal antibody (gifted by Prof. Miki Shinohara, Kinki University) [36 (link)] were used as the primary antibody at 1/1000 to 1/5000 dilution. As the secondary antibody, horseradish peroxidase-conjugated anti-rabbit immunoglobulins swine polyclonal antibody (P0399; Dako; Glostrup, Denmark), anti-mouse immunoglobulins goat polyclonal antibody (P0447; Dako) or anti-guinea pig immunoglobulins rabbit polyclonal antibody (P0141; Dako) was used at 1/1000 to 1/3000 dilution. The immunocomplexes were developed using WesternSure Chemiluminescent Western Blot Reagent (LI-COR; Lincoln, NE, USA) and the images were captured by C-Digit Blot Scanner (LI-COR). Protein Ladder One Plus, Triple-color (Nacalai Tesque) was used as the molecular weight standard. Other procedures of western blotting followed earlier publications [31 , 32 (link)].
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3

Quantification of Pancreatic Insulin Cells

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After 31 weeks of study, o/n fasting animals were sacrificed by decapitation. The pancreas and fat tissues (retroperitoneal, epidydimal, mesenteric, subcutaneous, and brown fat) were immediately removed, weighted, and fixed in 10% buffered formalin.
Fixed pancreas samples were embedded in paraffin blocks, cut at a thickness of 3 µm and analyzed by immunohistochemistry (n = 4 for each group). Immunolabelling was performed with an antibody against insulin (dilution 1:8000, A0564 Dako) and a secondary antibody labeled with HRP (dilution 1:100, P0141 Dako). All sections were observed under an optical microscope using the 10× objective lens (Olympus CH, Shinjuku, Japan) and insulin positive cells were counted. Nine serial sections were analyzed for each pancreas.
The total area (mm2) of the analyzed sections was calculated. For this purpose, slides containing the stained histological samples were digitized (APERIO CS2, Leica Biosystems, San Diego, CA, USA) and images were analyzed using the ImageJ 1.52 software. The results of the quantification are shown as insulin-positive cells per pancreas area (insulin positive cells/mm2) at the end of the study.
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4

Western Blot Analysis of Autophagy Markers

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Cell extracts were prepared using standard lysis buffer (100 mM Tris-HCl, 100 mM NaCl, 1% NP-40, 1 mM DTT, 10 mM NaF, 0.5 mM Na3VO4) with protease inhibitor (Roche, IN) and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (Bio-rad, CA). Proteins were transferred onto PVDF membranes (Immobilon-P, Millipore, MA) and visualized using antibodies against LC3 (L7543, Sigma Aldrich), p62 (03-GP62-C, American Research Products) and actin (A2066, Sigma Aldrich, MO) with the appropriate secondary reagents goat anti-rabbit HRP (P0448, Dako, CA) [actin, LC3] or rabbit anti-guinea pig HRP (P0141, Dako, CA) [p62].
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5

Automated Immunochemical Profiling of Proteins

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Immunochemical staining of size-separated proteins in the range of 12–240 kD molecular weight were carried out using ProteinSimple's WES system (Biotechne, UK). The WES is an automated capillary-based system for performing size-based, immunochemical quantitation of proteins, using chemiluminescent detection. Antisera to Ory c 1 code 74 was used as the primary antisera at a dilution of 1/25. A secondary HRP labelled rabbit anti guinea pig immunoglobulin antisera (P0141, DAKO UK) was used at a dilution of 1/50. The optimised antisera dilutions for sensitivity and specificity were established through experimentation.
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6

Immunohistochemical Staining of Pancreatic Tissue

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Immunohistochemistry was performed at the Pancreas Research Laboratory of the University of Zürich, using a previously established protocol (35 (link), 36 (link)). Briefly, sections of formalin-fixed, paraffin-embedded pancreatic tissue were deparaffinised, boiled in citrate for antigen demasking, and blocked prior to incubation with the primary antibody directed against human REG1A or REG3A, respectively, at a 1:800 dilution. Following incubation with the biotinylated secondary antibody (Dako Cat# P0141), avidin and biotinylated enzyme (Vectastain ABC kit, Vector Laboratories, Cat#PK-4000), sections were stained with 3,3-diaminobenzidine tetrahydrochloride dihydrate, counterstained with hematoxylin (Dako, Cat#CS70030-2), and coverslipped.
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