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23 protocols using dp26 digital camera

1

Parasite Morphometric Analysis Protocol

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We took morphometric data and optical micrographs of parasites using an Olympus SZX16 stereo microscope, CKX41 inverted microscope, and BX50 upright microscope (Olympus Corp., Tokyo, Japan), equipped with a DP26 digital camera (Olympus) and cellSens. Differential interference micrographs were taken using BX50 microscope. We performed morphological identification of parasite species by comparing to previous descriptions (Lane, 1914 ; Witenberg, 1925 ; Van der Westhuysen, 1938 ; Chabaud, 1957 (link); Popova, 1965 ; Prahardani et al., 2019 (link)) (Figs. S2-4, Table S1). All parasite specimens are stored in the Laboratory of Parasitology, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Japan.
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2

Histological Staining of Tissue Sections

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Sections were deparaffinized and rehydrated in a series of ethanol before being placed in following sequence of solutions: Bouin's fixative (picric acid, formaldehyde, and concentrated acetic acid) at 60°C, 1 hour; running water, 10 minutes; Weigert's hematoxylin working solution, 10 minutes; running water, 10 minutes; demineralized water, 1 minute; chromotrop 2R‐acid fuchsin (2/3 chromotrope 2R 1:100 solution in 1% acetic acid and 1/3 acid fuchsin 1:100 solution in 1% acetic acid), 10 minutes; demineralized water, 10 seconds; 1% phosphomolybdic acid (dissolved in demineralized water), 5 minutes; and 2,5 methyl blue (dissolved in acetic acid), 5 minutes. The sections were dehydrated in a series of ethanol and were mounted with pertex. Sections were analyzed with light microscopy using an Olympus BX51 microscope, and pictures were obtained using an Olympus DP26 digital camera.
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Immunohistochemical Staining of FOXJ1 in Tissue Sections

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Staining was performed as previously reported (39 (link)). In brief, tissue sections were cut at 4μm and deparaffinized in xylene and absolute alcohol. Endogenous peroxidase activities were blocked with a solution of 3% hydrogen peroxide and absolute alcohol 1:1 for 15 minutes. Heat induced antigen retrieval was performed with a pressure cooker (122+/−2°C) for 45 seconds at 15+/−5 PSI in citrate buffer (pH6.0). Immunohistochemistry was performed using a polyclonal rabbit antibody to FOXJ1 (HPA005714, Sigma-Aldrich) at a dilution of 1:75 incubated for 45 minutes at room temperature followed by labeled polymer-HRP anti-rabbit IgG incubated 30 minutes and visualized with 3,3′-Diaminobenzidine (DAB) (brown in color: Dako Envision System). The slides were counterstained with hematoxylin. Images were acquired using an Olympus BX41 microscope and an Olympus DP26 digital camera.
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Immunohistochemical Staining of CD45+ Cells

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Sections were deparaffinized and rehydrated in a series of ethanol. To reveal antigens, sections were heated to 97°C in citrate buffer. Sections were washed in TRIS‐Buffered Saline (TBS) (20 mmol/L Tris·HCl [Sigma], 137 mmol/L NaCl [Sigma], pH 7.6), and a solution of H2O2 in TBS was used to block endogenous peroxidase enzymes. Sections were rinsed in TBST (0.05% Tween‐20 in TBS), blocked in TBST+5% milk, and incubated overnight at 4°C with primary antibody (monoclonal rat‐anti‐CD45 antibody, 1:100, catalogue number 550539, BD Pharmingen, San Diego, CA) dissolved in TBST with 5% milk. Sections were rinsed in TBST and incubated 1 hour at RT with HRP‐conjugated secondary antibodies (polyclonal goat‐anti‐rat and anti‐rabbit antibodies, 1:1000, DakoCytomation) dissolved in TBST with 5% skimmed milk. Sections were rinsed in TBST before binding of antibody was visualized using 3,3′‐diaminobenzidine tetrahydrochloride hydrate solution (Sigma, D5637). Sections were counterstained with Mayer's hematoxylin, dehydrated, and mounted using Aquatex. Sections were analyzed with light microscopy using an Olympus BX51 microscope. Pictures were obtained using an Olympus DP26 digital camera.
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Histological Analysis of Mouse Intestines

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Mouse small intestines were fixed with 10%-buffered formalin for 24 h at room temperature and then embedded in paraffin. Tissues were sectioned at 6-μm and stained with H&E using standard protocols. Images were acquired using an Olympus microscope equipped with a DP-26 Digital camera (Olympus, Tokyo, Japan).
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Histological Analysis of Mouse Organs

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Mice colons and different organs were fixed in 10% formalin for 24 h or longer at room temperature, then embedded in paraffin. Tissues were sectioned at 6 μm thickness and stained with hematoxylin and eosin (H&E) using standard protocols established in our own lab. Images were acquired using an Olympus microscope equipped with a DP-26 digital camera.
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7

Evaluating Antitumor Effects of HDACis in Pancreatic Tumor Microenvironment

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40 μl of Matrigel (Corning) was plated in black walled, flat bottom 96 well plates (Corning) and allowed to polymerize for 30 minutes at 37°C and 5% CO2. 5 × 103 PANC-1 GFP cells and 1 × 104 primary pancreatic fibroblasts were seeded together with HDACi's with or without other chemical inhibitors in 100 μl DMEM/F12 containing 10% FBS, 1% GlutaMax, and 1% penicillin/streptomycin and 2% Matrigel. In experiments with PANC-1 cells were cultured alone, 5 × 103 PANC-1 GFP were used. Fluorescence readings were measured using a blue optical kit (Ex 490 nm/Em 510-570 nm) on a Modulus II Microplate Multimode Reader. Images were taken using a CX41 Inverted Microscope with a DP26 Digital Camera (Olympus). Experiments were performed in triplicate wells and repeated at least twice.
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8

Colon Histological Assessment Protocol

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A representative sample from the middle region of the colon was fixed in 4% paraformaldehyde at 4˚C for 24 h, embedded in paraffin, sectioned (5-µm), stained with hematoxylin (at room temperature for 5 min) and eosin (at room temperature for 2 min) and then observed using an IX 51 epifluorescence Olympus microscope (Olympus Corporation) equipped with a DP-26 digital camera at x40 magnification.
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9

Quantifying Macrophage Infiltration in Kidney

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To evaluate the infiltration of macrophages into kidney tissue, we performed immunohistochemistry (IHC) using a rabbit anti-rat CD68 antibody (1:500, ab125212; Abcam plc, Cambridge, UK) and paraffin sections. After deparaffinization and rehydration, the specimens were incubated with 1% hydrogen peroxide for 15 min at room temperature, then heated at 95 °C for 20 min for antigen retrieval and probed with the primary antibody for 1 h at room temperature. IHC images were captured using a DP26 digital camera (Olympus, Tokyo, Japan).
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10

Immunohistochemical Detection of Ki67 Expression

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For staining with the proliferation marker Ki67, 6-μm-thick paraffin-embedded tissue sections were deparaffinized in xylene, incubated in 3% hydrogen peroxide in PBS for 30 min, then treated with 10 mM sodium citrate buffer (pH 6.0) containing 0.05% Tween 20 and heated in a pressure cooker for 10 min (antigen retrieval). Sections were blocked with goat serum for 45 min at 37°C, followed by incubation with anti-Ki67 antibody (1:50; Vector Laboratories) for 1 hour at 37°C. After washing with PBS containing 0.01% Tween 20, sections were incubated first with the appropriate biotinylated secondary antibody for 30 min at 37°C, and then with reagents from the Vectastain ABC kit (Vector Laboratories) to allow color development. Sections were counterstained with hematoxylin, dehydrated, and coverslip-mounted. Images were acquired using an Olympus microscope equipped with a DP-26 digital camera.
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