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Nomo 1

Manufactured by Leibniz Institute DSMZ
Sourced in Germany

The NOMO-1 is a specialized laboratory instrument designed for the measurement and analysis of volatile organic compounds (VOCs). It utilizes advanced gas chromatography and mass spectrometry techniques to provide accurate and reliable data on the composition and concentration of VOCs in various samples. The core function of the NOMO-1 is to enable researchers and analysts to identify and quantify VOCs with a high degree of precision and sensitivity.

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15 protocols using nomo 1

1

Culturing AML Cell Lines MOLM-16, NOMO-1, OCI-AML3

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AML cell lines MOLM-16,NOMO-1, and OCL-AML3 were purchased from DSMZ-German Collection of Microorganisms and Cell Cultures (DSMZ no. ACC 555: MOLM-16, ACC 542: NOMO-1, ACC 582: OCI-AML3). MOLM-16 and NOMO-1 were cultured in RPMI-1640 medium (Gibco/Thermo Fisher Scientific, Waltham, MA, USA) and OCI-AML3 in α-MEM (with nucleosides; Gibco/Thermo Fisher Scientific) supplemented with GlutaMAX (Gibco CTS/Thermo Fisher Scientific), foetal bovine serum (20% for MOLM-16 and OCI-AML3; 10% for NOMO-1), and antibiotics.
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2

Culturing Hematopoietic Cell Lines

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NK-92 parental cells were purchased from the American Type Culture Collection (ATCC) and were cultured with MEM Alpha Medium (1X) + GlutaMAX (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 20% v/v FBS, 1% v/v L-glu, 1% v/v P/S and 100 U/mL IL-2 (Miltenyi Biotec, Bergisch Gladbach, Germany). AML cell lines (NOMO-1, THP-1, U-937) and B-ALL cell lines (KOPN-8, MHH-CALL-4, Nalm-6) were obtained from the German Collection of Microorganisms and Cell Cultures GmbH (DSMZ, Braunschweig, Germany). Transgenic Nalm-6 GFP/Luciferase and U-937 CD19tag/Luciferase were generated as previously described [39 (link),40 (link)]. Leukemia cell lines were cultured with RPMI medium supplemented with 10% v/v FBS, 1% v/v L-glu, 1% v/v P/S (Thermo Fisher Scientific, Waltham, MA, USA) except MHH-CALL-4 which was supplemented with 20% v/v FBS.
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3

Authentication and Characterization of AML Cell Lines

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The AML cell lines (EOL-1, HL-60, Kasumi-1, KG-1a, MOLM-13, MV4-11, NB-4, Nomo-1, SKM-1, THP-1, U937) were obtained from the German Collection of Microorganisms and Cell Cultures (Braunschweig, Germany) and American Type Culture Collection (Manassas, VA, USA). Routine testing for mycoplasma contamination was performed every 3 months, and the authenticity was determined by the flow cytometry-based immunophenotyping according to the provider’s description.
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4

Cell Line Procurement and Culture

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HL-60 cells were obtained from NCI 60-Panel. Jurkat and MV4-11 cells were obtained from ATCC. OCI-AML5, RS4;11, SEM, ML-2, MOLM-13, MOLM14, NOMO-1, OCI-AML2, KOPN-8, EOL-1, and OCI-AML3 cells were obtained from the Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Braunschweig, Germany). All used cells were cultured in the appropriate media and conditions.
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5

Characterization of Human AML Cell Lines

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We obtained human AML cell lines OCI-AML3, Sig-M5, NOMO-1, and OCI-M1 from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ, Brunswick, Germany) We obtained other human AML cell lines (HL-60, MV-4–11, THP-1, KG-1a, HEL and Kasumi-1) from American Tissue Culture Collection (ATCC, Manassas, Virginia). All cell lines were obtained during 2014–2015. Cell lines were incubated at 37°C under 5% CO2, in RPMI 1640 plus 10% FBS and additional growth factors as necessary according to the tissue bank guidelines for each cell line. Mycoplasma testing was performed at least annually using the MycoAlert (Lonza) detection kit. Cell lines identity was confirmed at the time of study using the ATCC Human STR Profiling Cell Authentication Service. Cell passage number was maintained below 20 culture splits.
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6

AML Cell Lines and Inhibitors

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Acute Myeloid Leukemia (AML) cell lines F-36P, HL-60, KASUMI-1, MOLM-13, MONO-MAC-6, MV-4-11, NB-4, NOMO-1, OCI-AML2, OCI-AML3, and THP-1 were purchased from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Germany). Cell lines were maintained at 37°C and 5% CO2 in appropriate media (Supplementary Table 1). 293T cells were cultured in DMEM (Gibco, Germany) along with 10% FBS (Biochrom, Germany). Cell lines were routinely verified for mycoplasma contamination using Venor®GeM Mycoplasma Detection Kit (Sigma-Aldrich, Germany). Cell lines were authenticated by Multiplexion, Germany. The inhibitors were purchased from Abcam (UK), Biozol (Germany), and Santa Cruz Biotechnology (US).
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7

Pediatric AML Diagnostic Samples

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All of the pediatric AML patient samples were obtained at the time of diagnosis from the University-Hospital of Padua and stratified according to the AIEOP AML 2002/01 protocol AML 2002/01 [47 (link)]. Patient characteristics are listed in Supplementary Table 1. Seven BM samples from healthy donors were obtained as control. All human myeloid cell lines (THP-1, NOMO-1, OCI-AML4, ML2, HL60, K562, Kasumi-1, NB4, U-937, SEM and REH) were obtained from DSMZ (Braunschweig, Germany) and 293T cells were obtained from ATCC (Manassas, VA, USA). All cell lines were maintained under standard conditions suggested by the manufacturer.
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8

Cell Line Cultivation and Characterization

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A375, HEK 293T, THP-1, RS4;11, HT-1080, Jurkat, U937, and MCF-7 cells were purchased from ATCC. SET-2, HL-60, KG1, MOLM-13, MV4;11, NOMO1, NB4, OCI-AML2, OCI-AML3, HEL, KASUMI-1, TF-1, and K562 cells were purchased from DSMZ. DAOY, IMR5, ONS-76, RD-ES, and TC71 cells were gifts from Johannes Schulte and were verified using STR genotyping (Genetica DNA Laboratories). HEK 293T, DAOY, HT-1080, IMR, Jurkat, MCF-7, ONS-76, RDES, and TC71 cells were grown in Dulbecco’s modified Eagle’s medium (DMEM) with 10% fetal bovine serum (FBS). THP-1, RS4;11, HL-60, KG1 MOLM-13, MV4;11, NOMO1, NB4, OCI-AML2, HEL, KASUMI-1, K562, U937 SET2, and Jurkat cells were grown in RPMI-1640 medium with 10% FBS. CD45+ human cord blood (CB) cells (StemCell Technologies, Catalog 70008.3) were thawed in IMDM with 15% FBS and DNase1 (1 mg/mL) and grown in IMDM supplemented with 10% FBS, 1 × penicillin/streptomycin, 100 ng/mL TPO, 100 ng/mL SCF, and 100 ng/mL G-CSF. All cells were grown at 37 °C in a 5% CO2 incubator. Cell viability assays were performed on CB cells immediately after thawing. Cell lines were tested for mycoplasma using the MycoAlertTM Mycoplasma Detection Kit (Lonza).
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9

Cell Line Cultivation and Characterization

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A375, HEK 293T, THP-1, RS4;11, HT-1080, Jurkat, U937, and MCF-7 cells were purchased from ATCC. SET-2, HL-60, KG1, MOLM-13, MV4;11, NOMO1, NB4, OCI-AML2, OCI-AML3, HEL, KASUMI-1, TF-1, and K562 cells were purchased from DSMZ. DAOY, IMR5, ONS-76, RD-ES, and TC71 cells were gifts from Johannes Schulte and were verified using STR genotyping (Genetica DNA Laboratories). HEK 293T, DAOY, HT-1080, IMR, Jurkat, MCF-7, ONS-76, RDES, and TC71 cells were grown in Dulbecco’s modified Eagle’s medium (DMEM) with 10% fetal bovine serum (FBS). THP-1, RS4;11, HL-60, KG1 MOLM-13, MV4;11, NOMO1, NB4, OCI-AML2, HEL, KASUMI-1, K562, U937 SET2, and Jurkat cells were grown in RPMI-1640 medium with 10% FBS. CD45+ human cord blood (CB) cells (StemCell Technologies, Catalog 70008.3) were thawed in IMDM with 15% FBS and DNase1 (1 mg/mL) and grown in IMDM supplemented with 10% FBS, 1 × penicillin/streptomycin, 100 ng/mL TPO, 100 ng/mL SCF, and 100 ng/mL G-CSF. All cells were grown at 37 °C in a 5% CO2 incubator. Cell viability assays were performed on CB cells immediately after thawing. Cell lines were tested for mycoplasma using the MycoAlertTM Mycoplasma Detection Kit (Lonza).
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10

Cell Culture Maintenance Protocol

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Jurkat (ATCC Cat# TIB-152, RRID : CVCL_0367), HeLa (ATCC Cat# CCL-2.2, RRID : CVCL_0058), NOMO-1 (DSMZ Cat# ACC-542, RRID : CVCL_1609), K562 (ATCC Cat# CCL-243, RRID : CVCL_0004) and U87 (ATCC Cat# HTB-14, RRID : CVCL_0022) cell lines were all acquired from ATCC and cultured as recommended by the supplier. LAN-1 cell line (DSMZ Cat# ACC-655, RRID : CVCL_1827) was acquired from DSMZ and cultured as recommended by the supplier. Cell lines were screened monthly for mycoplasma contamination Briefly, Jurkat, K562 and NOMO-1 cells were grown in 10% FBS-supplemented RPMI1640 (Sigma Aldrich) suspension culture and kept at <1x106/mL density. LAN-1, HeLa and U87 cell lines were grown in 10% FBS-supplemented DMEM (Thermo Fisher) adherent culture and split regularly at around 80-90% confluency using trypsin (Thermo Fisher)-based disaggregation, to avoid overgrowth.
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