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3 protocols using anti e cadherin clone 24e10

1

Immunoblotting and Protein Isolation Protocols

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The immunoblotting, isolation of nuclear protein fractions, immunoprecipitation and mice protein extraction procedures were performed as previously described [22 (link)].
The primary antibodies used in this work are as follows: human anti-p53 (clone BP53-12, Novocastra Laboratories, Newcastle Upon Tyne, UK), mouse anti-p53 (clone 1C12, Cell Signaling Technology, Beverly, MA, USA), anti-RPL11 (clone 3A4A7, Invitrogen, Carlsbad, UK), anti-PARP-1 (Cell Signaling Technology), anti-RPS6 (clone C-8, Santa Cruz Biotechnology, CA, USA), anti-RPS14 (clone H-130, Santa Cruz Biotechnology), anti-Mdm2 (clone SMP14 and clone H-221, Santa Cruz Biotechnology), anti-Slug (clone C19G7, Cell Signaling Technology), anti-E-cadherin (clone 24E10, Cell Signaling Technology), anti-c-Myc (clone N-262, Santa Cruz Biotechnology), anti-β-actin (clone AC-74, Sigma-Aldrich), and anti-Lamin B (C-20, Santa Cruz Biotechnology). Horseradish peroxidase-conjugated secondary antibodies were from GE-Healthcare (Milan, Italy).
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2

Multimodal Evaluation of Tissue Markers

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Human tissues were fixed in formalin and mouse tissues were fixed in 4% paraformaldehyde for 24 h before paraffin embedding. Immunostaining was performed on 5-μm sections via standardized automated protocols on a Ventana Discovery XT machine with the following antibodies: anti-L1CAM (clone 14.10, BioLegend), anti-Ki67 (clone 30–9, Roche) and anti-E-cadherin (clone 24E10, Cell Signaling). For dual LGR5 FISH and L1CAM immunofluorescence, freshly cut 3-μm paraffin sections were stained with the RNAscope 2.5 LS Brown kit (ACD, 322100) for FISH and the Bond Polymer Refine Detection kit (Leica, DS9800) for immunofluorescence on a Leica Bond RX instrument following routine manufacturer protocol ACD 2.5 DAB and Protocol F, using RNAscope 2.5 LS probe for human LGR5 (ACD, 311028) and anti-L1CAM antibody (clone 14.10, BioLegend) with Tyramide Alexa Fluor 594 (Life Technologies, B40957) instead of the DAB step. An Ultra-High-Def mouse-on-mouse kit (StatLab) was used for mouse L1CAM staining. For Ki67 and L1CAM scoring, stained serial sections with overlapping morphology were aligned with the SIFT algorithm and the extent of immunostaining was scored with ImageJ software. L1CAM staining in Extended Data Fig. 4l,m was scored with ImageJ software. All other immunostaining was visually scored in a blinded fashion.
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3

Immunohistochemical Analysis of S100P and E-Cadherin

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S100P and E-cadherin expressions were assessed by imunnohistochemistry in 5 μm sections of FFPE TMAs following standard protocol. Briefly, slides were deparaffinised and hydrated followed by antigen retrieval performed in a HC-Tek Epitope Retrieval Steamer Set for 40 min in 10 mM citrate buffer, pH 6.0. Endogenous peroxidase activity was blocked with 3% hydrogen peroxide for 10 min and primary antibodies (anti-S100P, EPR6143, Abcam, UK and anti-E-Cadherin, Clone 24E10, 3195, Cell Signaling, USA) were incubated overnight. Dako REAL Envision Detection System Peroxidase/DAB+ (DAKO, Denmark) was used for detection and sections were then counterstained with hematoxylin, dehydrated and mounted. An experienced pathologist (FS) performed grading of staining, and cases were dichotomized using a simplified classification scheme: retaining (graded as 3+) versus loss (0 to 2+), or positive (from 1+ to 3+) versus negative (graded as 0).
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