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4 protocols using d eclipse c1 confocal system

1

Visualizing HTLV-1 Tax-induced Cellular Stress

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Confocal fluorescence-microscopy to visualize tubulin aggregates, multinucleation, Annexin V-FITC/PI or Alexa Fluor 594 TUNEL-staining in HTLV-1 Tax-expressing cells was performed on a Zeiss LSM800 instrument with an Airyscan super-resolution detector and stage CO2 incubator (Carl Zeiss Microscopy). All images were taken using either Plan-Apochromat 40x/1.3 or Plan-Apochromat 63x/1.4 oil immersion objectives and Zeiss ZEN system software. The expression of HTLV-1 p30II-GFP in cotransfected cells was visualized on an inverted Nikon Eclipse TE2000-U microscope and D-Eclipse C1 confocal system (Nikon Instruments, Melville, NY) equipped with 633 nm and 543 nm He/Ne and 488 nm Ar lasers using a Plan Apo 20x/0.75 objective lens.
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2

Immunofluorescent Analysis of HIF1α and JNK2

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Paraffin-embedded whole-tissue sections were sectioned at 6 μm thickness and deparaffinized. Antigen retrieval was performed by heating in 0.1 mol/l sodium citrate (pH 6.0) using a microwave. Slides were then incubated overnight at 4 °C with a mixture of two primary antibodies, anti-HIF1α (Sigma) and anti-JNK2 (Cell Signaling), using antibody diluents (IHC World). Slides were rinsed with PBS and then incubated for 1 h with Alexa Fluor 594 or Alexa Fluor 488 (Life Technologies). Slides were mounted with ProLong Gold anti-fade reagent containing 4′,6-diamidino-2-phenylindole (DAPI; Thermo Fisher Scientific). Cell death was analyzed using the in situ cell death detection kit (Roche), following the manufacturer’s instructions. Confocal images were obtained using a Nikon D-Eclipse C1 confocal system and processed with Nikon EZ-C1 3.90 and Adobe Photoshop software.
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3

Confocal Imaging of Whole Mount Muscle

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Confocal stacks of images of whole mount muscle staining were acquired with a z-step of 1.05 μm using a Nikon Eclipse microscope with a D-Eclipse C1 confocal system. 20 consecutive images were combined into a single image processed by MetaMorph image analysis software (Molecular Devices) using Maximum-Stack Arithmetic. Epifluorescent images were obtained with a Nikon Eclipse 600 epifluorescence microscope with a Princeton Instruments Micromax 5 MHz cooled CCD camera, and analyzed using MetaMorph. Quantitative, and when possible, blinded methods were developed so as not to introduce any bias. Uniformity across different sections and animals was maintained by manually adjusting the threshold for each nonsaturated image for the following types of measurements:
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4

Immunofluorescence Imaging of Muscle Tissues

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Antibodies used were against GFP (1:500; Invitrogen, Life Technologies, Grand Island, NY, USA), quail endothelial marker Qh1 (1:10) and Pax7 (1:10) (both from Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA, USA), desmin (1:100; MP Biomedicals, Santa Ana, California, USA) and SMA (1:200; Sigma-Aldrich, Rehovot, Israel), both recognizing smooth and striated muscle [65 (link)], and ZO-1 (1:100, Zymed, Life Technologies, Grand Island, NY, USA). Secondary antibodies were coupled either to Cy2 or Rhodamine (1:100; Jackson ImmunoResearch Laboratories, West Grove, PA, USA). Nuclei were visualized with Hoechst.
Images were photographed using a DP70 (Olympus) cooled CCD digital camera mounted on a BX51 microscope (Olympus) [14 (link)]. Confocal sections of whole-mount preparations encompassing their entire thickness were photographed using a Nikon Eclipse 90i microscope with a Plan Apo 10x/0.45 dry objective (Nikon) and a D-Eclipse c1 confocal system (Nikon) at 2.7 μm increments through the z-axis. Images were z-stacked with EZ-C1 3.90 FreeViewer software. For figure preparation, images were exported into Photoshop CS3 (Adobe). If necessary, the levels of brightness and contrast were adjusted to the entire image and images were cropped without color correction adjustments or γ adjustments. Final figures were prepared using Photoshop CS2.
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