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34 protocols using type 1 collagen

1

Collagen-Mediated Cancer Cell Invasion

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Inserts containing 8-μm pores in 24-transwell plates (Corning incorporated-Life Sciences, Tewksbury, MA, USA) were coated with type I collagen (Nitta Gelatin Inc, Osaka, Japan) (45 μg/30 μl/well) and hardened for 24 h. OSCC cells (1.5 × 104) were placed in the inserts coated with type I collagen. NOFs or CAFs (1.5 × 104) were added to the lower chamber of the well. A CXCL1-neutralizing antibody was added to evaluate whether CXCL1 induced the invasive growth of cancer cells. After 48 h, the penetrated cells through the pores of inserts were fixed, stained with 0.25% crystal violet and counted by light microscopy (Olympus, Tokyo, Japan).
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Cell Adhesion Assay on ECM Proteins

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Ninety‐six well plates were precoated with 0.3 mg/mL collagen type I (Nitta Gelatin, Osaka, Japan), 0.3 mg/mL collagen type IV (Nitta Gelatin), 50 μg/mL fibronectin (Sigma), FBS (BioWest), or 20 μg/mL laminin (Sigma) and then blocked with DMEM containing 0.5% BSA for 1 h. Thereafter, 2 × 104 cells were seeded onto the coated plates and incubated for 30 min. Unadhered cells were removed by washing with DMEM containing 0.1% BSA. Adherent cells were fixed with 4% paraformaldehyde (PFA), stained with 0.5% crystal violet, and washed. Finally, crystal violet was solubilized with 2% SDS, and absorbance of 595 nm (A595) was determined by a microplate reader.
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Isolation and Differentiation of Mouse Keratinocytes

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Primary cultures of keratinocytes were prepared from the epidermis of newborn ICR mice as described previously [27 (link)]. Briefly, the epidermis was separated from the dermis and incubated in 0.25% (w/v) trypsin solution (Gibco BRL, Tokyo, Japan) overnight at 4 °C. The dispersed cells were plated in dishes coated with collagen type I (Nitta Gelatin, Osaka, Japan), and cultured in minimal essential medium (MEM) supplemented with 4% (v/v) Chelex (Bio-Rad, Hercules, CA, USA)-treated fetal calf serum (FCS), epidermal growth factor (10 ng/mL; Gibco BRL), and 0.05 mM CaCl2. Under these conditions, keratinocytes were maintained in an immature and proliferating state. The cells were used for experiments 1 week after plating.
To induce differentiation of keratinocytes, CaCl2 concentration in the medium was increased to 0.2 mM. Calcium treatment induced morphological changes in cells as observed through a phase-contrast microscope and also induced expression of filaggrin protein, a marker of keratinocytes differentiation, as detected by immunoblot (Supplemental Figure S9). The cells were incubated in a medium containing 10 μM BrdU for 5 h, permeabilized with 0.1% (v/v) NP-40, and denatured in 50 mM NaOH. BrdU incorporation was detected using an anti-BrdU antibody (BD Biosciences, Franklin Lakes, NJ, USA). The nuclei were stained with DAPI (Invitrogen, Carlsbad, CA, USA).
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4

Cell Adhesion Assay on Extracellular Matrix

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For in vitro cell adhesion assay, 96-well plates were pre-coated with either collagen type I (Nitta Gelatin, Osaka, Japan), collagen type IV (Nitta Gelatin), fibronectin (Sigma-Aldrich, St. Louis, MO, USA), laminin (Sigma-Aldrich) or FBS, and then blocked with MEM containing 0.5% BSA. Thereafter, 1 9 10 4 cells were seeded onto the coated plates and incubated for 30 min at 37°C. Unadhered cells were removed, and adherent cells were fixed with paraformaldehyde, stained with crystal violet and washed. Finally, crystal violet was solubilized with sodium dodecyl sulfate, and absorbance at 550 nm was determined using a microplate reader (Dainippon Pharmaceutical).
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5

Fluorescence Imaging of Photosensitizers

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For fluorescence microscopy, T98G cells were cultured in 8-chamber glass bottomed dishes (Iwaki) coated with collagen type-I (Nitta gelatin, Osaka, Japan), and KMY-J cells were cultured on 8-chamber glass bottomed dishes coated with 0.04% PEI. Cells were cultured for 24 hr before the transport assay. Fresh medium containing 25 μM NPe6 or β-M-chlorin was applied to the culture and incubated for 1 to 4 hr. Photosensitizer-treated cells were washed twice with PBS and fixed with 4% paraformaldehyde (Sigma-Aldrich) in 0.1 M phosphate buffer for 30 min at room temperature. Fluorescence of NPe6 and β-M-chlorin was obtained using an Eclipse Ti-U inverted microscope (Nikon, Tokyo, Japan) equipped with a filter cube (Ex. 340-380 nm, DM 400 nm, Em. 672-716 nm) and a CMOS Zyla5.5 camera (Andor technology, Belfast, UK). Fluorescence data were collected and processed by NIS-elements (Nikon) and Photoshop (Adobe Systems, San Jose, CA, USA). Fluorescence intensities were measured and calculated by ImageJ software (NIH, Bethesda, MD, USA).
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6

Adhesion of CTOSs to Collagen

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Approximately 100 CTOSs were incubated with hybridoma-cultured media or purified antibody at 37 °C for 3 h, and then plated in 96-well tissue culture plates (IWAKI Shizuoka, Japan) coated with type I collagen (Nitta Gelatin Inc., Osaka, Japan). The total number of and number of adhered COTSs were counted on day 0 and day 2, respectively.
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7

ChAT Promoter Luciferase Assay in HEK293 Cells

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As previously reported in our study, ChAT promoter region of 2.0 kb length was subcloned into a luciferase vector (Toyo B-Net Co., LTD, Tokyo, Japan) [1] . HEK293 cells were cultured on type I collagen (Nitta Gelatin Inc., Osaka, Japan)-coated dish in low glucose Dulbecco's Modified Eagle Medium (DMEM; FUJIFILM Wako Pure Chemical Corporation, Osaka Japan) with 10% fetal bovine serum (FBS; Thermo Fisher Scientific K.K., Tokyo, Japan) and antibiotics (FUJIFILM Wako Pure Chemical Corporation). HEK 293 cells or H9c2 cells (1x10 5 cells / well) cultured in a 24-well plate were transfected using Effectene Transfection Reagent (QIAGEN, Venlo, Netherlands) according to the manufacturer's instructions. Cells were treated with either one of the synthesized chemical compounds or phosphate buffered saline (PBS) 48 h post-transfection. Cells were collected at 8, 16, or 24 h after the treatment and lysed to obtain samples for measuring the luciferase activity. The concentration of SNPiP (dissolved in dimethyl sulfoxide) for in vitro experiments was optimized at 1 mM. Data were obtained from six to nine independent experiments.
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8

DDR1 Inhibition Modulates Collagen-Induced PEC

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Mouse primary PEC were plated and rested overnight. Cells were incubated in RPMI-1640 containing 1% serum and supplemented with different concentrations of DDR1 inhibitor (0.01, 0.1 and 1 μM) for 1 h followed by additional treatment with type I collagen 100 μg/mL (Nitta Gelatin, Japan). After 6 or 24 h of type I collagen stimulation, cells were lysed for phospho DDR1 ELISA (Cell Signaling Technology) and total RNA isolation. Total RNA was isolated and amplified using an RNeasy Mini kit (Qiagen) and Transcriptor Universal cDNA Master (Roche) according to manufacturer’s instructions. Quantitative RT-PCR was performed on a LightCycler LC480 (Roche) for C3, Mmp2, Mmp14 and Vcam1 using the following primers: C3 (Mm01232779_m1, TaqMan® Gene Expression Assays, Applied Biosystems), Mmp2 (Mm00439498_m1), Mmp14 (Mm00485054_m1), and Vcam1 (Mm01320970_m1). Relative gene expression was calculated with the 2-∆Ct method using GAPDH as an endogenous control.
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9

Immunoblotting and Immunofluorescence Protocols

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Mouse anti-vinculin (V9131, dilution ratio: 1/20,000 (WB), 1/500 (IF)), rabbit anti-CAP (SORBS1) (HPA027559, 1/2,000 (WB), 1/100 (IF)) and anti-β tubulin (T4026, 1/2,000) antibodies were purchased from Sigma (Saint Louis, MO). Mouse anti-β-actin antibody (ab6276, 1/10,000) was purchased from Abcam (Cambridge, UK). Mouse anti-YAP (sc-101199, 1/100 (IF), 1/1000 (WB)), and rabbit anti-ERK2 (sc-154, 1/10,000) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit anti-aP2 (#3544, 1/2,000) antibodies was purchased from Cell Signaling Technology (Boston, MA). Rabbit anti-vinexin and anti-ArgBP2 polyclonal antibodies were described previously18 (link),22 (link). Alexa Fluor 568 phalloidin and 633 phalloidin was purchased from Thermo Fisher Scientific (Rockford, IL). Type I collagen was purchased from Nitta Gelatin (Osaka, Japan). Insulin and 3-Isobutyl-1-methylxanthine (IBMX) were purchased from Sigma.
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10

Collagen Gel-Embedded Cell Sensitivity Assay

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Collagen gel droplet-embedded culture drug sensitivity tests were performed as described previously [19 (link)]. In brief, Type I collagen, Ham’s F-12 medium at 10-fold concentration and reconstitution buffer (Nitta Gelatin., Osaka, Japan) were mixed at a ratio of 8:1:1 on ice. KOC-2S or SKOV3 (1 × 106) cells were suspended in 3 ml of the cold solution. These collagen mixtures were dropped into 6 well plates as 5 spots each with a volume of 30 μl and subjected to dome-like gelation at 37 °C in 5% CO2 for 1 h. Then, the droplets were cultured in DMEM supplemented with 2% FBS with or without 15 μM DOX. Unstimulated or activated neutrophils with LPS (1 × 107/2 ml) were added in DMEM with or without DNAse I (1000 U/ml). After 12 h, collagen gels were digested with 0.02% collagenase type 1 (Thermo Fisher Scientific, Waltham, MA) and cells recovered. After washing, the ratios of apoptosis were evaluated using flow cytometry FACSCalibur (BD Biosciences, Franklin Lakes, NJ). In brief, all cells were incubated with FITC-conjugated Annexin V and 7-AAD at a final concentrations of 2.25 μg/ml and 0.1 μg/ml, respectively, for 15 min at 4 °C. In flow cytometric profile (FSCxSCC), tumor cells were gated and the ratios of annexin V (+) cells were calculated in the gated area.
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