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31 protocols using alexa fluor 488 dextran

1

TRIM-Away Partial and Complete Rec8 Degradation

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In partial Rec8 degradation TRIM-Away experiments, TRIM21 expressing, metaphase II–arrested eggs were microinjected with 2 to 3 pl of Rec8 antiserum (1:30 to 1:50 dilution) (19 (link)) and Alexa Fluor 488 Dextran 10,000 molecular weight (MW) (to validate antibody microinjection by fluorescence imaging) (1:40 dilution; Molecular Probes, D22910) in 0.05% (v/v) NP-40–PBS. In complete Rec8 degradation TRIM-Away experiments, TRIM21-expressing, metaphase II–arrested eggs were microinjected with 2 to 3 pl of Rec8 antiserum (1:2 dilution) (19 (link)) and Alexa Fluor 488 Dextran 10,000 MW (1:40 dilution; Molecular Probes, D22910) in 0.05% (v/v) NP-40–PBS. In simultaneous Rec8 degradation and cytoskeletal manipulation experiments, all TRIM-Away microinjections were performed in M2 medium containing individual or a combination of cytoskeletal drugs as appropriate.
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2

Evaluating Blood-Brain Barrier Integrity

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Blood eye barrier (BEB) integrity was used as a proxy to determine blood brain barrier (BBB) integrity.61 (link),104 (link) 6–10 day-old female flies of each genotype were individually injected under CO2-anesthesia with 69 nL of 50 mg/mL of 10,000 MW Alexa Fluor® 488-Dextran (Invitrogen catalogue # D22910) using a glass capillary (Drummond 3-000-203-G/X) mounted on a Nanoject II Auto nanoliter injector (Drummond Scientific). Injected flies were incubated for 2 h at 25°C, following which they were anesthetized on ice, and placed under a fluorescent stereoscope to score BBB integrity. The presence of a fluorescent hemolymph exclusion line or diffused eye fluorescence was used to score intact and disrupted BBB, respectively. Representative images of eyes were acquired using a DSLR camera mounted on the stereoscope.
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3

Dextran Trafficking Dynamics in CCVs

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Dextran trafficking and fusion with CCVs was measured as described previously [47 (link)]. Briefly, HeLa cells were infected with mCherry-WT C. burnetii in six-well plates (5X104 cells/well; two wells per condition). On the day before the indicated time points, cells were trypsinized, resuspended to 3X105 cells/ml, and replated onto ibidi slides (9X103 cells per channel). On a Nikon spinning disk confocal microscope (60X oil immersion objective) with Okolab Bold Line stage top incubator, CCVs were identified and marked using NIS elements (Nikon) prior to labeling with Alexa fluor 488 dextran (MW 10,000, Invitrogen) for 10 min in 10% RPMI. The cells were washed with PBS 5–6 times and replaced with 10% RPMI. Z-stacked confocal images were obtained for each CCV every 4 min for 28 min (t = 0 through 28; 8 time points). The mean dextran fluorescent intensity of an identical region of interest (ROI) within each CCV was quantified for each time point (ImageJ). The fold change of dextran fluorescent intensity over initial time point (t = 0) was plotted against time. At least 15 CCVs were imaged per condition for each of three independent experiments.
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4

Evaluating Blood-Brain Barrier Integrity

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Blood eye barrier (BEB) integrity was used as a proxy to determine blood brain barrier (BBB) integrity.61 (link),104 (link) 6–10 day-old female flies of each genotype were individually injected under CO2-anesthesia with 69 nL of 50 mg/mL of 10,000 MW Alexa Fluor® 488-Dextran (Invitrogen catalogue # D22910) using a glass capillary (Drummond 3-000-203-G/X) mounted on a Nanoject II Auto nanoliter injector (Drummond Scientific). Injected flies were incubated for 2 h at 25°C, following which they were anesthetized on ice, and placed under a fluorescent stereoscope to score BBB integrity. The presence of a fluorescent hemolymph exclusion line or diffused eye fluorescence was used to score intact and disrupted BBB, respectively. Representative images of eyes were acquired using a DSLR camera mounted on the stereoscope.
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5

Xenopus Embryo Lineage Tracing

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Xenopus laevis and Xenopus tropicalis embryos were handled and fertilized in vitro using standard procedures. Embryos were injected with up to 10 nl vol. two-cell stage-injected embryos were co-injected with Alexa Fluor-488 Dextran (Invitrogen) as a lineage tracer and sorted by left- or right-side injection before harvesting. To maximize the distribution of reagents, blastomeres at the two-cell stage were injected twice at opposite ends (one cell for half-sided injections, both cells for radial injections). Whole embryos were staged according to the normal table (Nieuwkoop & Faber, 1967 ). X. tropicalis animal caps (ACs) were manually dissected and staged based on sibling embryos.
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6

Visualizing Neuronal Morphology and FMRP

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Individual NL neurons in the chicken were dye-filled as described previously (Wang and Rubel, 2012 (link)). Briefly, 50-μm-thick sections containing NL neurons were prepared from a fixed chicken brainstem. Individual neurons in NL were filled with AlexaFluor® 488 dextran (Invitrogen, Eugene, OR) using electroporation. Fluorescent immunocytochemistry for FMRP was then performed as described above on sections containing dye-filled neurons. Filled neurons and FMRP immunoreactivity were imaged using confocal microscopy (Fluoview 1000; Olympus, Center Valley, PA). Following deconvolution of the image stacks, neuronal morphology and FMRP immunoreactivity were surface rendered and visualized using Huygens Professional software (Scientific Volume Imaging, Hilversum, North Holland, Netherlands).
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7

Quantifying Calcium Concentrations with Dextran-based Probes

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Calcium concentrations were quantified as described
22 (link) with low-affinity Rhod-dextran (Kd=551 ± 107μM) (Invitrogen) in conjunction with the calcium-insensitive Alexa-Fluor 488 dextran (Invitrogen) at concentrations of 0.25mg/ml and 0.1mg/ml, respectively. Dextrans were loaded for 12hr, followed by a 12hr chase.
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8

Xenopus Embryonic Manipulation Protocols

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X. laevis and X. tropicalis eggs were collected, in vitro fertilized, microinjected and cultivated following standard procedures. Embryos were staged according to Nieuwkoop and Faber (1967). Radial injections were performed at the 2–4 cell stage, targeted injections were performed either at the 4 cell, 8 cell or 16 cell stage. For lineage tracing they were either injected with Alexa Fluor-488 Dextran, Alexa Fluor-594 Dextran (Invitrogen) or with 25-100 pg/blastomere of either nuclear lacZ or eGFP mRNA. Tissue transplantations were carried out in 0.8x MBS + Gentamycin in agarose-coated dishes. The transplant was kept in place with a cover slip for one hour, after which the transplanted embryo was transferred to a new dish in 0.1x MBS + gentamycin.
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9

Quantifying Calcium Concentrations Using Rhod-dextran

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Calcium concentrations were quantified as described
22 (link) with low-affinity Rhod-dextran (
Kd=551 ± 107μM) (Invitrogen) in conjunction with the calcium-insensitive Alexa-Fluor 488 dextran (Invitrogen) at concentrations of 0.25mg/ml and 0.1mg/ml, respectively. Dextrans were loaded for 12hr, followed by a 12hr chase.
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10

Quantifying Alexa Fluor 488-Dextran Degradation

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Cells were grown on coverslips to 60–80% confluence and loaded with 0.4 mg/ml Alexa Fluor 488‐dextran (10,000 MW, Invitrogen D22910) for 20 min in culture medium as previously described (Liu et al, 2018 (link)). Following aspiration of the culture medium, cells were washed twice with PBS to remove the un‐endocytosed dextran. Subsequently, the cell samples for uptake analyses were immediately fixed with 4% PFA, and the other parallel samples for chase analyses were incubated in normal culture medium for 4 h and then fixed with 4% PFA after culture medium removal. Drug treatment was carried out during the chase period. The coverslips were mounted with ProLong Diamond Antifade Mountant with DAPI (Invitrogen P36962). Images were acquired using a confocal microscope (Leica, TCS SP8) with the excitation wavelength set at ~488 nm and emission wavelength at 520 ± 20 nm. Fluorescence intensity was quantified using Fiji software. The fluorescence intensity of the uptake and the chase was recorded as Fuptake and Fchase, respectively. The degradation of Alexa Fluor 488‐dextran was calculated with the following equation: Degradation(%)=(FuptakeFchase)/Fuptake×100.
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