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15 protocols using ab25916

1

Western Blot Analysis of Autophagy-Related Proteins

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Treated cells were dissolved in RIPA buffer including protease inhibitors, and then 20 µg protein samples were added to SDS-PAGE gel electrophoresis followed by a transfer of protein to a PVDF membrane. Membranes were sealed using 5% fat-free milk for 1 h and then cultured with antibodies against LOX (Abcam, ab174316), Beclin-1 (Abcam, ab207612), LC3B (Abcam, ab192890), p62 (Abcam, ab109012), ATG5 (Abcam, ab108327), mTOR (Abcam, ab134903), p-mTOR (Abcam, ab109268), AMPKα (Abcam, ab32047), p-AMPKα (Abcam, ab133448), NFATC1 (Abcam, ab25916), ACP5 (Abcam, ab238913), CTSK (Abcam, ab239506), and GAPDH (Cell Signaling Technology, #5174) overnight at 4 °C. After a 30-min washing step in TBS containing 0.1% Tween20, the membranes were cultured with HRP (horseradish peroxidase)-conjugated secondary antibodies (Abcam, ab205718 and ab6728). Visualization was carried out using Pierce™ ECL western blotting substrate (Thermo Fisher Scientific, USA) according to the manufacturer’s protocol. Analysis was performed with Image-Pro Plus software.
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2

Immunofluorescence Quantification of Osteoclasts

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For immunofluorescence staining, the differentiated osteoclasts were washed with PBS thrice and fixed with 4% paraformaldehyde for 30 mins and then permeabilized with Triton X-100 for 10 minutes. The cells were stained with the primary antibodies against MMP9 (1:1000, ab38898, Abcam), NFATc1 (1:1000, ab25916, Abcam) at 4°C overnight, then, washed and incubated with secondary Alexa Fluor 555 antibodies (1:1000) and Molecular Probes Alexa Fluor 488 Phalloidin (Cell Signaling Technology, Danvers, USA) for 1 h in dark. After the cells were stained with DAPI for 10 minutes, The cells were imaged using a fluorescence microscope. The osteoclast area and the number of nuclei per osteoclast were quantified using the Image J software.
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3

Immunohistochemical Staining of Bone Marrow

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Sections of paraffin-embedded bone marrow were immunohistochemically stained using the NovolinkTM Polymer Detection Kit (Leica, Wetzlar, Germany), pH 6.0 for antigen unmasking and the NFAT2 monoclonal antibody, clone ab25916 (Abcam, Cambridge, MA, USA) (see Additional file 7: Table S2).
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4

Immunofluorescence for PDAC Cell Characterization

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Immunofluorescence in PDAC cells was performed as described previously [6 (link)], but using 13% or 4.5% of paraformaldehyde and utilizing the following primary and secondary antibodies: Myctag (Cell Signaling, #2272S, 1:200; Cell Signaling Technology, Danvers, MA, USA), HA (Cell Signaling, #2367, 1:100; Cell Signaling Technology, Danvers, MA, USA), pSer21EZH2 (Bethyl IHC-00388, 1:100; Bethyl, Montgomery, AL, USA), ALEXA Fluor 568 donkey anti-mouse (Invitrogen #A10037, 1:500; Carlsbad, CA, USA), and ALEXA Fluor 488 donkey anti-rabbit (Invitrogen #A32790, 1:500; Carlsbad, CA, USA). To assess the HA-NFATc1/pSer21EZH2 colocalization coefficient, 1228 DAPI-stained nuclei were counted in eleven IF pictures to determine the number of nuclei positive for both HA-NFATc1 and pSer21EZH2. H&E staining and IHC were performed as previously described [6 (link)]. Primary antibodies were: EZH2 (mouse: Cell Signaling #5246, 1:100; human: Leica NCL-L-EZH2, 1:300; Leica Biosystems Wetzlar, Germany), NFATc1 (abcam ab25916, 1:200; Cambridge, UK), and pSer21EZH2 (Bethyl IHC-00388, 1:50; Bethyl, Montgomery, AL, USA).
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5

Immunofluorescence Analysis of Vascular Cells

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Immunofluorescence on human carotid artery sections and mice aortic sinus sections was performed. Briefly, for double-staining, sections were incubated with anti-α-SMA antibody (ab240654, Abcam), together with anti-NFATc1 antibody (ab25916, Abcam), anti-NFATc2 antibody (sc-7296, Santa Cruz), anti-NFATc3 antibody (sc-8405, Santa Cruz) or anti-NFATc4 antibody (ab99431, Abcam) at 4°C overnight, followed by a 30-min incubation with secondary antibody conjugated to Alexa Fluor 594 (R37121, Molecular probes) and Alexa Fluor 488 (R37116, Molecular probes). The signals of individual and merged images for antigen detection were performed using a fluorescence microscope (Olympus, Japan) and Axiovision 4.8 software.
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6

Histological analysis of murine femurs

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After conducting the micro-CT analysis, the femurs were preserved at 4°C for histological and immunohistochemical analyses. The right femurs of the 3 groups of mice were first decalcified in 15% ethylenediaminetetraacetic acid (EDTA, Sigma), embedded in paraffin blocks, and sectioned at a thickness of 5 μm using a microtome. Then, the sections were subjected to hematoxylin and eosin (H&E), tartrate-resistant acid phosphatase (TRAcP) and immunohistochemical (IHC) staining. The primary antibodies against MMP9 (ab38898, Abcam), NFATc1 (ab25916, Abcam), Heme Oxygenase 1 (HO-1; ab13243, Abcam) and NOX1 (ab55831, Abcam) were used for immunohistochemistry. The stained sections were photographed using a Optical Microscope Olympus CX43 (Tokyo, Japan). The histomorphometric analyses of the bones were performed using the BIOQUANT OSTEO software (Bioquant Image Analysis Corporation, Nashville, TN, USA).
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7

Protein Expression Profiling in PTECs and PCs

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Proteins were isolated from various cultured PTECs and PCs, and protein levels were detected. Briefly, protein extracts were boiled in RIPA buffer (Beyotime, Shanghai, China) and separated by SDS-PAGE electrophoresis. Western blotting was performed with the antibodies against synaptopodin (syn) (1:1000, ABN481, Millipore) to detect its protein level in PCs. Anti-Bim antibodies (1:1000, ab32158, Abcam) were used to examine the HG-induced Bim expression and the inhibition effect on PTECs after transfection with the Lentiviral vector. Antibodies against NFAT2 (1:1000, ab25916, Abcam) were used to detect NFAT2 levels after transfection with siNFATc1 or p-NFATc1 into PTECs or PTEC-Bim-shRNA. Anti-MICAL2 antibodies (1:1000, 13965-1-AP, Proteintech) were used to detect the MICAL2 level in PCs after coculturing with un-transfected PTECs and PTEC-Bim-shRNA, and after transfection of NONHSAT179542.1 siRNA and siNC into PCs. β-actin (1:5000, 60008-1-Ig, Proteintech) was used as a reference protein.
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8

Western Blot Analysis of Macrophage Proteins

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After treatment with Uro-A, RIPA buffer (Beyotime) was used to lyse BMMs for harvesting total protein. We used SDS-polyacrylamide gels (Beyotime) to separate the proteins in the samples. Subsequently, proteins were transferred to PVDF membranes (Merck Millipore, MA, United States) and blocked with QuickBlock™ blocking buffer (Beyotime) for 1 h at room temperature. After incubation with primary antibodies overnight, PVDF membranes were rinsed three times with TBST (NCM Biotech, Suzhou). Then, the corresponding secondary antibodies (Beyotime) were added for another 1 h. We used an ECL reagent (Epizyme, Sigma–Aldrich) to detect antibody-antigen complexes. The following primary antibodies were used in our experiment: cathepsin K (CTSK; ab19027), nuclear factor of activated T cells 1 (NFATc1; ab25916), MMP9 (ab228402), ULK1 (ab203207), Beclin 1 (ab210498), LC3 (ab192890) and β-actin (ab6276), which were purchased from Abcam (Cambridge, United Kingdom). In addition, primary antibodies against ERK (#4695), phospho-ERK (#4370), JNK (#9252), phospho-JNK (#9255), P38 (#8690), and phospho-P38 (#4511) were provided by Cell Signaling Technology (Boston, United States).
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9

Protein Expression Analysis in Cardiac Tissue

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Apical myocardia harvested from four to six hearts per treatment group were homogenized in a lysis buffer containing phosphatase and proteinase cocktail inhibitor, in a ratio of 100:1:1, respectively. Lysates of normalized concentrations treated with reducing agents were denatured at 100°C for 10 min and separated on SDS-PAGE gels. The transferred protein bands were blocked and immunoblotted overnight in the following primary antibodies: β1AR (ab3442; Abcam), β2AR (ab182136; Abcam), MEF2 (ab64644; Abcam), GRK5 (ab64943; Abcam) GATA4 (ab84593; Abcam), NFAT (ab25916; Abcam), AC5 (PAC-501AP; FabGennix), AC6 (PAC-601AP; FabGennix), AC7 (PAC-701AP; FabGennix), ANP (sc-515701; Santa Cruz Biotechnology), BNP (sc-271185; Santa Cruz Biotechnology), GRK2 (sc-13143; Santa Cruz Biotechnology), pNF-κB (3033T; Cell Signaling Technology), NF-κB (8242T; Cell Signaling Technology), Cleaved Caspase-3 (9661T; Cell Signaling Technology), Collagen Type I (14695-1-AP, Proteintech), Collagen Type III (13548-1-AP, Proteintech), and GAPDH (10494-1-AP; Proteintech). Immunoblots were performed in triplicates and normalized with their respective loading controls.
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10

Quantifying Key Protein Markers in Cellular Signaling

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Levels of Rab27a, IL-11, activated T-cell nuclear factor 1 (NFATc1), TRAP and GAPDH protein were analyzed using western blotting analysis, as previously described (17 (link)). The primary antibodies used were Rab27a (ab55667, 1:500), IL-11 (ab187167, 1:1,000), NFATc1 (ab25916, 1:1,000), TRAP (ab65854, 1:1,500) and GAPDH (ab8245, 1:3,000), which were all purchased from Abcam.
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