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5 protocols using rabbit anti satb2

1

Comprehensive Immunostaining and In Situ Hybridization

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Immunostaining and in situ hybridization were performed as previously described [47 (link)]. The Fezf2 cRNA probe corresponds to nucleotides 644 to 1,374 of mouse Fezf2 (GenBank: NC_000080). LacZ staining was preformed according to standard protocols. Primary antibodies used: Chicken anti β-gal (Abcam, 1:500), Rabbit anti BLBP (Millipore, 1:500), Rat anti CTIP2 (Abcam, 1:1,000), Guinea Pig anti GFAP (Advaned Immuno Chemical, 1:100), Rabbit anti PAX6 (Covance, 1:100), PHH3 (Cell Signaling, 1:100), Rabbit anti SATB2 (Abcam, 1:1,000), Goat anti SOX2 (Santa Cruz Biotech, 1:500), Rabbit anti SOX5 (Abcam, 1:500), Rabbit anti TBR1 (Abcam, 1:1,000), Mouse anti Tuj1 (Covance, 1:1,000). Primary antibodies were detected using AlexaFluor-conjugated secondary antibodies (Invitrogen, 1:1,000). DNA was visualized with DAPI (1:50,000).
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2

Multimodal Analysis of Embryonic Brain

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Embryonic brains were fixed in 4% PFA overnight. 10 μm Cryo-sections were pre-treated using the RNAscope Universal Pretreatment Kit (Advanced Cell Diagnostics). RNA In Situ Hybridizations (ISH) were performed using the RNAscope Fluorescent Multiplex Reagent Kit (Advanced Cell Diagnostics) according to manufacturer’s instructions. The target genes (Unc5D and GPC3) are listed in the Key resources table. Sections were immunostained using mouse anti-Pvim ⅓00 (Abcam), rat anti-Ctip2 1/600 (Abcam) or rabbit anti-Satb2 (Abcam) in combination with the Alexa Fluor 488-, 555-, and 647-conjugated mouse/rat/rabbit secondary antibodies (Abcam; 1/400). Both primary and secondary antibodies were diluted in 2% BSA, 0.3% Triton X-100, PBS. Nuclei were counterstained with DAPI before mounting. Images were acquired using a Zeiss LSM880 confocal laser scanning microscope using a 20x, 40× objective and 2 Airy disk pinhole, and processed with ImageJ software.
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3

Immunostaining of Mouse Brain Sections

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Adult mice were perfused and fixed with 4% paraformaldehyde. Brains were extracted and equilibrated in 30% sucrose. Adult brains were harvested and sectioned on a freezing sledge microtome. Free-floating brain tissue sections were rinsed twice with TBS and blocked at room temperature in TBS plus 0.3% Triton X-100 and 3–10% normal donkey serum (Jackson ImmunoResearch) for 2 h at room temperature. Tissues were then incubated with primary antibody in staining buffer (TBS plus 0.3% Triton X-100 and 1% NDS; tissue sections) overnight at 4°C. Antibodies included rabbit anti-Satb2 (1:250; Abcam), sheep anti-parvalbumin (1:5000; R&D Systems). After washing 3× with TBS, tissue was incubated with donkey secondary antibodies conjugated to FITC, Cy3, or Cy5 (1:500; Jackson ImmunoResearch) for 4 h at room temperature or overnight at 4°C. Tissue was washed twice in TBS and incubated with DAPI at 0.1 μg/ml for 10 min at room temperature. Tissue was then refixed with 4% paraformaldehyde for 10 min at room temperature and washed, and coverslips were mounted using PVA-DABCO (polyvinyl alcohol and 1,4 diazabicyclo[2.2.2]octane in glycerin).
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Immunofluorescent Staining: Detailed Protocols

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For immunofluorescent staining, sections were rinsed in PBS and blocked with 5% normal serum/0.1% Triton X-100/PBS at room temperature. Primary antibodies were diluted in blocking solution and incubated 1–2 days at 4°C with gentle agitation. The antibodies utilized were; rabbit anti-Parvalbumin (Swant), chicken anti-EGFP (Aves Labs), rat anti-CTIP2 (Abcam), rabbit anti-SATB2 (Abcam), rabbit anti-CUX1 (Santa Cruz), mouse anti-NEUN (Chemicon), rabbit anti-Cleaved Caspase-3 (Cell Signaling Technology), rabbit anti-IBA1 (Wako), goat anti-IGF1 (R&D Research), rabbit anti-PKCγ (Santa Cruz), rabbit anti-MAP2K1/2(MEK1/2) (Abcam), rabbit anti-P-MAPK1/3(ERK1/2) (Cell Signaling Technology) and rabbit anti-IGF1Rβ (Cell signaling Technology). After rinsing in PBS/T, the secondary antibody was diluted in blocking solution and added overnight at 4°C. Secondary antibodies included Alexa Fluor 488, 546 or 568, and 647 conjugated anti-rabbit, anti-mouse, anti-rat, or anti-goat IgG (Invitrogen). For some experiments slides were then incubated in Hoechst or DAPI for nuclear labeling, rinsed, and mounted. Images were collected with a Zeiss LSM 710, 780, or Leica SP5 laser scanning confocal microscope.
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5

Immunohistochemistry and In Situ Hybridization of Mouse Brain

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Mice were perfused with 4% paraformaldehyde (PFA) at different postnatal ages. All brains were fixed in 4% PFA overnight, cryoprotected in 30% sucrose in phosphate-buffered saline overnight and cut into 20 μm-thick sections. For immunohistochemistry, brain sections were incubated with rabbit anti-Satb2 (1:300, Abcam) or goat anti-5-HTT antibody (1:1000, Immunostar) at 4°C overnight, and then incubated with biotinylated horse anti-rabbit IgG or horse anti-goat IgG (1:500, Jackson ImmunoResearch) at room temperature for 3 h followed by incubation with streptavidin-Cy3 (1:1000, Jackson ImmunoResearch) and counterstaining with Hoechst 33258 (1:2000, Sigma) at room temperature for 1 h.
The AuCl3 staining was performed as a previous study (Wahlsten et al., 2003 (link)). The brain sections were stained with 0.2% gold chloride (AuCl3) in phosphate buffer. The process was taken place in darkness. Once axonal staining became evident, the reaction was stopped by transferring sections to 2.5% sodium thiosulfate anhydrous for 5 min.
The antisense digoxigenin-labeled RNA probes of RORβ, Cux2, Ctip2, and Tle4 were synthesized according to the Allen Brain Atlas website, and in situ hybridization was performed as described in our previous study (Song et al., 2011 (link)).
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