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Nb600 408

Manufactured by Novus Biologicals
Sourced in United States

The NB600-408 is a laboratory equipment product from Novus Biologicals. It is designed for specific laboratory applications, but a detailed description while maintaining an unbiased and factual approach is not available at this time.

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20 protocols using nb600 408

1

Histological Analysis of Lung Tissue

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For general histology, in paraffin sections from lung tissue samples, Hematoxylin and eosin (H&E) staining were performed according to standard steps.
For immunofluorescence, 6-μm sections were treated with xylene and graded alcohols. Antigen retrieval was accomplished by microwaving slides in EDTA antigen retrieval buffer (pH 8.0). The slides were blocked with 5% BSA for 1 h and then incubated overnight at 4°C with rabbit polyclonal anti-collagen-I antibody (1:50; NB600-408; NOVUS), mouse monoclonal anti-elastin antibody (1:50; NB100-2076; NOVUS), or mouse anti-Fibrinogen beta chain (FGB) antibody (1:50; M01204-1; Boster), followed by Alexa Fluor 488-conjugated goat anti-rabbit secondary antibodies (A-11008, Invitrogen) or Alexa Fluor 488-conjugated goat anti-mouse secondary antibodies (A32723, Invitrogen) for 1h at room temperature and nuclei were stained with DAPI (62248, Invitrogen). The Pannoramic 250 Flash III (3DHISTECH) was used to scan the sections, and CaseViewer 2.4 was used to record the images.
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2

Immunohistochemical Analysis of COL1A1 Expression

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To determine the expression of COL1A1 (1:200; NB600-408; Novus Biologicals) (Jun et al., 2019 (link)) after uterine damage, frozen uterine sections (12 μm) were fixed in 4% paraformaldehyde in phosphate buffered saline (PBS) for 10 min at room temperature, washed in PBS, and treated with 0.1% Triton X-100 for 10 min at room temperature and washed in PBS. Non-specific staining was blocked using protein block serum (Dako, Carpinteria, CA, United States). The sections were then incubated overnight with primary antibody at 4°C, washed in PBS, and incubated with secondary antibody (A-11001, 1:1000; Invitrogen) for 60 min at room temperature. After three washes in PBS, the sections were counterstained and mounted. Images were obtained using a suitable microscope (Carl Zeiss, Oberkochen, Germany) and analyzed using ZEN software (Carl Zeiss).
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3

Immunofluorescence Analysis of Macrophage Polarization and Collagen Deposition

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RAW264. 7 or HGF-1 cells seeded in confocal dishes were fixed with 4% paraformaldehyde at 4°C for 15 minutes after washed by PBS 3 times for 20 minutes each time. The cells were then permeabilized with 0. 2% Triton X-100 for 10 minutes and blocked with 2% BSA for 2 hours, and each step was followed by twice PBS washes to remove residual reagents. After the above steps were completed, primary antibodies were added to the cells and incubated at 4°C overnight. The primary antibodies were added as follows: Piezo1 antibody and CD68 were co-incubated to localize Piezo1 on macrophages; CCR7 (1:200;NB100-712; Novus Biologicals, USA) and CD206 (1:200; #24595; Cell Signaling Technology, USA) were co-incubated to identify macrophage polarization; COL-I (1:200;NB600-408; Novus Biologicals, USA) or COL-III (1:200; NB600-594; Novus Biologicals, USA) was incubated to indicate the existence of collagen in HGF-1. Afterwards, the cells were incubated with donkey anti-goat secondary antibody IgG H&L Alexa Fluor 594 (1:200; ab150132; Abcam, UK) and the goat anti-rabbit IgG H&L Alexa Fluor 488 for one hour at room temperature in the dark. After washing away the secondary antibodies with PBS, DAPI was used to stain the nuclei for 10 minutes in the absence of light. Finally, the images were acquired by the confocal laser scanning microscope and quantitatively analyzed by Image J software.
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4

Intracellular Procollagen Transport Imaging

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Primary control and patient‐derived fibroblasts (Patient 1 a) were cultured in Ham’s F10 (Life Technologies, Paisley, UK) supplemented with 12% fetal calf serum.
To investigate intracellular procollagen transport in control and patient cells, cells were grown for 48–72 hr on glass coverslips and incubated in the presence of 167 µM (50 µg/ml) ascorbic acid for 30 min prior to fixation. Cells were fixed with 4% paraformaldehyde in PBS and processed for immunofluorescence using either only anti‐collagen IαI (Novus Biologicals NB600‐408, rabbit, 1:2,000) for analysis of the extracellular collagen, or anti‐collagen IαI in combination with the COPII marker anti‐Sec31A (BD Biosciences 612,350, mouse, 1:1,000) or the cis‐Golgi marker anti‐GM130 (BD Biosciences 610,823, mouse, 1:1,000) and imaged by confocal microscopy as described previously (McCaughey et al., 2016) using an Alexa‐Fluor‐anti‐rabbit‐568‐conjugated (Thermo Fisher Scientific) and/or Alexa‐Fluor‐anti‐mouse‐488‐conjugated secondary antibody, Prolong Diamond with DAPI for mounting and a Leica SP5 for analysis and image acquisition.
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5

Immunofluorescence Analysis of ONH LC Cells

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Primary human ONH LC cells were seeded on 12-well plates on coverslips and grown to confluency. After undergoing TLR4 inhibition and activation treatments as previously described for 72 hours, cells were washed with 1X PBS, fixed with 4% paraformaldehyde (PFA), permeabilized with 0.95% Triton X-100 in PBS, and blocked using Superblock Blocking Buffer in PBS (REF37580, Thermo Fisher Scientific) for 60 minutes at room temperature. Cells were labeled overnight at 4°C with rabbit anti-Fibronectin (F3648, Sigma-Aldrich) at a 1:100 dilution, or rabbit anti-collagen-1 (NB600–408, Novus Biologicals) at a 1:100 dilution in Superblock Blocking Buffer in PBS. Treatment without the primary antibody was used as a negative control. Coverslips were then incubated for at room temperature 2 hours using Alexa Fluor 488 donkey anti-rabbit IgG (REFA21206, Invitrogen – Thermo Fisher Scientific) at a 1:200 dilution. Coverslips were mounted to slides with Prolong Gold mounting medium containing DAPI (Invitrogen-Molecular Probes). Image acquisition was performed using Zeiss Axio Imager Z2 microscope. Images were taken at X20 or X40 magnification; scale bar represents 20μm.
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6

Histological Analysis of Kidney Injury

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Tissue sections were stained with hematoxylin and eosin (HE), Periodic acid-Schiff’s (PAS) and Masson’s trichrome stains using standard protocols. The mesangial area was determined from the PAS stained sections and the fibrotic area from the Masson’s trichrome stained sections as previously described28 (link). The antibodies used in this study were those against FXR (sc-13063, Santa Cruz), Grp78 (ab21685, Abcam), Chop (ab59396, Abcam), 4-hydroxynonenal (4-HNE, ab46545, Abcam), Kim-1 (ab78494, Abcam), 8-oxo-2′-deoxyguanosine (8-oxo-dG, ab64548, Abcam), SDHA (#11998, CellSignaling, Danvers, MA, USA), tumor necrosis factor (TNF, ab6671, Abcam), CD4 (sc-7219, Santa Cruz, Dallas, TX, USA), aSMA (NBP1-30894, Novus Biologicals, Littleton, CO, USA) and Collagen I (ColI, NB600-408, Novus Biologicals). TUNEL staining on kidney paraffin sections was performed with an ApopTag kit (Millipore, Billerica, MA, USA), according to the manufacturer’s instructions.
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7

Quantifying Cell Distribution in Engineered Tissues

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Tissue strips cut from tubular constructs both circumferentially and axially were fixed in 4% paraformaldehyde, embedded in optimal cutting temperature compound (OCT, Tissue-Tek), and frozen. For constructs cultured on porated sleeves, axial strips were taken both from regions along a column of pores and regions between columns of pores. 9 μm thick sections were stained with Lillie’s trichrome. Sections were also stained for collagen I, α1 (Novus, NB600-408). Samples were blocked in 5% normal donkey serum, incubated in primary antibody at a concentration of 1 μg/ml, and stained with Cy3-conjugated anti-rabbit secondary antibody (Jackson Immunoresearch). Hoechst 33342 (Invitrogen, H3570) was used to counterstain nuclei.
The cell distribution was quantified using a custom MATLAB® script.26 (link) Briefly, the user identifies the lumenal tissue surface, and the script determines the distance of the centroid of each cell from the lumenal surface. This quantification was performed on 4X images of Hoechst-stained axial sections. For each section a series of 4X images was pieced together to span the entire length of the axial section.
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8

Quantifying Collagen I in Lung Fibroblasts

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Adapting from previously published methods (Jones et al., 2010 (link); Vogel et al., 2014 (link)), lung fibroblasts were plated to confluence in clear-bottom 96-well plates in EMEM containing 10% FBS and allowed to attach for 6 h. Media was then exchanged with EMEM containing 0.1% FBS plus the indicated compound concentration. All wells were treated with a final concentration of 0.5% DMSO. After 72 h cells were fixed with 4% formalin, then treated with 0.25% Triton X-100 and blocked with Li-Cor Odyssey Blocking Buffer (Li-Cor Biosciences, Lincoln, NE) before overnight incubation in a polyclonal rabbit antibody for collagen I (Novus NB600-408) diluted 1:150 in blocking buffer. Wells where then incubated with IR-dye-conjugated secondary antibody (Li-Cor #926-32211) diluted 1:500. Plates were imaged via a Li-Cor OdysseyXL system with quantification performed via densitometry. Results are represented as collagen I signal intensity relative to DMSO control.
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9

Immunohistochemical Analysis of Pancreatic Markers

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For immunohistochemical analysis, paraffin-embedded pancreas sections (except those for LYVE-1) were processed for antigen retrieval in sodium citrate buffer (pH 6.0). Slides were incubated for 30 min with primary antibody against PCK-26 (1:500; Abcam, ab6401), CD-31 (1:50; Abcam, ab28364), LYVE-1 (1:50; Abcam; ab14917) or collagen-I (1:100; NB600-408, Novus Biologicals). After incubation with species-specific biotinylated secondary antibodies (1:200) for 30 min and streptavidin-HRP for 30 min (Vectastain, ABC kit; Vector Labs), the immunoperoxidase reaction was visualized by using the VECTOR NovaRED Peroxidase HRP Substrate Kit (Vector Labs). Slides were counterstained with hematoxylin QS and visualized with an Olympus IX70 inverted microscope and QImaging QCapture Pro 6.0 Software.
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10

Quantifying Macrophage and Fibroblast Markers

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Cells were seeded at 40% confluence on round glass slides in 24-well plates. Cells were then fixed with 4% paraformaldehyde for 15 min at room temperature, followed by permeabilization with 0.1% Triton X-100 (Beyotime) in PBS. After blocking in goat serum at 37 °C for 30 min, the samples were incubated with antibodies against CD68 (Novus Biologicals, USA, NBP2-32831), CD206 (NovusBiologicals, USA, MAB2534), α-SMA (Novus Biologicals, USA, NBP2-33006), or Collagen I (Novus Biologicals, USA, NB600-408) in Diluent at 4 °C overnight. The samples were then incubated with secondary antibody (CST, USA, 8889/4412) at 37 °C for 1 h, followed by washing with PBS and staining with DAPI for nuclear visualization. Cell staining was examined under an inverted fluorescent microscope. The quantification of the mean fluorescence intensity (MFI) was performed using Image-Pro-Plus version 6.0.
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