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3 protocols using amyloid precursor protein

1

RIG-1 Signaling in Primary Human Astrocytes

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Human astrocytes were grown in culture as described in de Rivero Vaccari et al. in 2012
[10 (link)]. Primary human astrocytes (Lonza Basel, Switzerland) were grown in culture in complete Astrocyte Growth Medium (Lonza Basel, Switzerland) for seven days. RIG-1 signaling was stimulated with 5′ triphosphate double-stranded RNA (5′ppp dsRNA, Invivogen San Diego, CA, USA) as a specific ligand to stimulate RIG-1 signaling at different concentrations (2 and 4 μg/ml) for 18 hours. After stimulation, cells were harvested and immunoblotted for RIG-1 (Anaspec Fremont, CA, USA), phosphorylated IRF3 (Novus Biologicals Littleton, CO, USA), amyloid precursor protein (Abcam Cambridge, MA, USA) and amyloid-β (Epitomics Burlingame, CA, USA) expression as described.
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2

Antibody-based Protein Detection in Western Blots

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The following antibodies were used for Western blots: γ-tubulin and DNP (2,4-dinitrophenylhydrazone) (Sigma); LC3 (Nanotools), phospho-p70S6 kinase (Thr389), phospho-ULK1 (Ser757), p70S6 kinase and ULK1 (Cell Signaling Technology); polyUbiquitin (Dako) and K48-linked polyUbiquitin (Cell Signaling); amyloid precursor protein (Boehringer); p62 and 8-oxodG (Abcam); Iba-1 (Wako); and GFAP, synaptophysin, goat anti-rabbit and anti-mouse IgG linked to horseradish peroxidase (DakoCytomation). The fluorogenic peptides Suc-Leu-Leu-Val-Tyr-7-amido-4-methylcoumarin (Suc-LLVT-AMC) and 7-amino-4-methylcoumarin (AMC) were obtained from Calbiochem. Hexacosanoic acid (C26:0) and bafilomycin A1 were purchased from Sigma.
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3

Cerebrum Protein Analysis in Mice

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Cerebrum samples were collected from all mice 2 years after treatment and were homogenized in lysis buffer (Kurabo, Osaka, Japan) and centrifuged at 8000 × g for 10 min. Western blot analysis was performed using previously described methods.30 (link) The membranes were incubated at room temperature for 1 h with primary antibodies against amyloid precursor protein (1:1000; Abcam, Cambridge, MA, USA), amyloid-β (1:1000; Rockland Immunochemicals Inc., Gilbertsville, PA, USA), ionized calcium-binding adaptor molecule 1 (Iba1, marker of microglial and macrophage, 1:1000; Wako, Osaka, Japan), chemokine receptor 7 (CCR7, 1:1000; Abcam), CD80 (1:1000; Bioss Antibodies Inc., Woburn, MA, USA), CD163 (1:1000; Abcam), CD206 (1:1000; Abcam), plasmin (1:1000; Abgent, San Diego, CA, USA), urokinase-type plasminogen activator (uPA, 1:500; Abcam), and β-actin protein (1:5000; Sigma-Aldrich, St. Louis, MO, USA). The protein bands on the membranes were visualized following the incubation of membranes with horseradish peroxidase-conjugated secondary antibody (Novex, Frederick, MD, USA); band intensities were detected using the ImmunoStar Zeta regent (Wako, Osaka, Japan). The images of protein bands were acquired using the multi-grade software program (Fuji-film, Greenwood, SC, USA).
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