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3 protocols using sc 488

1

Immunohistochemistry for NeuN and ID1

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Immunohistochemistry for NeuN (a neuronal marker) and ID1 was performed using a published procedure (28 (link)). The sections were incubated in mouse anti-NeuN (1:800; MAB377; EMD Millipore, Billerica, MA, USA) or rabbit anti-ID1 (1:200; sc-488; Santa Cruz Biotechnology, Inc.) as primary antibodies, and in biotinylated horse anti-mouse (1:200; BA-2001; Vector Laboratories, Inc., Burlingame, CA, USA or rabbit anti-goat immunoglobulin G (1:200; BA-1100; Vector Laboratories, Inc.) and streptavidin peroxidase complex (VECTASTAIN® Elite ABC kit 1:200; Vector Laboratories, Inc.) as secondary antibodies. The antibodies were finally visualized with 3,3′-diaminobenzidine tetrahydrochloride. A negative control test was performed to establish the specificity of the immunostaining using pre-blocking serum (S-1000; Vector Laboratories, Inc.) instead of primary antibody. The negative control test showed no immunoreactivity in structures observed.
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2

Quantifying Hippocampal ID1 Levels in Mice

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ID1 levels in the mouse hippocampus (n=7 at each time point) were analyzed using a previously-published method (28 (link)). Hippocampal tissues were homogenized and ID1 levels were determined using a micro bicinchoninic acid (BCA) protein assay kit (Pierce; Thermo Fisher Scientific, Inc., Waltham, MA, USA). Nitrocellulose transfer membranes (Pall Life Sciences, Port Washington, NY, USA) were incubated with rabbit anti-ID1 (1:1,000; sc-488; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), β-actin (1:2,000, sc-47778; Santa Cruz Biotechnology, Inc.) and exposed to peroxidase-conjugated goat anti-rabbit immunoglobulin G (1:2,000; sc-2004; Santa Cruz Biotechnology, Inc.) for 2 h at 4°C and an enhanced luminol-based chemiluminescence kit (Pierce; Thermo Fisher Scientific, Inc.). The results of this analysis were scanned and densitometric analysis, as the relative optical density (ROD), was used for quantification of the bands using Scion Image software, version 2.0 (Scion Corporation, Frederick, MD, USA). A ratio of the ROD was calibrated as a percentage, with control mice designated as 100%.
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3

DNMT3A/B Immunoprecipitation and Id-1 Detection

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When cultured A2780 cells had reached approximately 80% confluence, the cell layer was washed with ice-cold 1×PBS. Nuclear extracts were collected using the NE-PER nuclear and cytoplasmic extraction kit. Then, salts were removed from the nuclear extracts using the Pierce Slide-A-Lyzer MINI Dialysis Unit (Pierce Biotechnology, Rockford, IL). The supernatant was collected, and total protein (300 μg) was prepared for later immunoprecipitation. The supernatant was incubated at 4°C for 2 h with 1 μg of Mouse anti-human DNMT3A (ab13888, Abcam, Cambridge, UK) or mouse anti-human DNMT3B (ab13604, Abcam, Cambridge, UK) antibody and 40 μL of 25% protein A/G agarose slurry. The protein A/G agarose was centrifuged at 5000 rpm and washed 3-4 times with ice-cold lysis buffer. Proteins were eluted with 20 μL of SDS loading buffer by boiling for 5 min and subjected to immunoblot analysis with Rabbit anti-human Id-1 (SC-488, Santa Cruz, CA, USA) antibody.
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