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Rt pcr reagent kit

Manufactured by Takara Bio
Sourced in China

The RT-PCR reagent kit is a set of essential components used for performing reverse transcription and polymerase chain reaction (RT-PCR) analysis. The kit includes reagents necessary for converting RNA to cDNA and amplifying target gene sequences.

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4 protocols using rt pcr reagent kit

1

Gene Expression Analysis Protocol

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Total RNA was extracted from the cells in each group using TRIzol® (Invitrogen). RNA was reverse transcribed to cDNA using the PrimeScript 1st Strand cDNA Synthesis kit (Takara Biotechnology Co., Ltd., Dalian, China) according to the manufacturer's instructions. RT-qPCR was performed using an RT-PCR reagent kit (Takara Biotechnology Co., Ltd.), according to the manufacturer's instructions. β-actin was used as an internal control. The primers for DOR, MDR1 and β-actin were synthesized by Invitrogen, and the primer sequences are presented in Table I. The qPCR reaction contained a total volume of 50 µl (2 µl template, 2 µl primer 1 (10 µM), 2 µl primer 2 (10 µM), 25 µl PCR MasterMix, 19 µl ddH2O). An SYBR® Green-based RT-qPCR assay (Beyotime Institute of Biotechnology, Shanghai, China)was used to determine the mRNA expression levels using an ABI PRISM 7900HT Sequence Detection system (Applied Biosystems; Thermo Fisher Scientific, Inc.), and the cycling conditions were as follows: 94°C for 2 min, followed by 30 cycles of dena-turation at 94°C for 30 sec, annealing at 64°C for 30 sec, and extension at 72°C for 30 sec. β-actin was used as an internal control to normalize gene expression levels. The PCR products were subsequently subjected to 1.0% agarose gel electrophoresis, and the results were scanned and analyzed using a gel documentation system (Syngene, Cambridge, UK).
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2

Real-Time PCR Analysis of Rat Cell Markers

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Total RNA from cultured cells was isolated using RNAiso Plus (TAKARA, Shiga) and used in real-time PCR at a final concentration of 350 ng/10 μL. RT-PCR was conducted using an RT-PCR Reagent Kit (TAKARA, Shiga) and PCR Amplifier (Bio-Rad, Hercules, CA). Real-time PCR was conducted using SYBR Green PCR Reagents (Takara, Shiga) and a 7500 Real-time PCR System (Applied Biosystems, Invitrogen). Primers are shown as followed.
Rat α-SMA Forward: 5′-TGCCATGTATGTGGCTATTCA-3′
Reverse: 5′-ACCAGTTGTACGTCCAGAAGC-3′
Rat CD31 Forward: 5′-GTGGAAGTGTCCTCCCTTGA-3′
Reverse: 5′-GGACAGGGCTGGTTCATAAAT-3′
Rat Snail Forward: 5′-CTTGCGTCTGCACGACCT-3′
Reverse: 5′-CTTCACATCCGAGTGGGTCT-3′
Rat GAPDH Forward: 5′-GGCACAGTCAAGGCTGAGAATG-3′
Reverse: 5′-ATGGTGGTGAAGACGCCAGTA-3′
Rat VE-cadherin Forward: 5′-GAAGAAACCACTGATTGGCACTGTG-3′
Reverse: 5′-TTATACCAGGCGTGGGTTTCTCTGT-3′
Primer sequences for genes were analyzed by real-time PCR. Relative mRNA expressions were calculated using ΔΔCt analysis.
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3

Quantification of Stem Cell Markers

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Total RNA was extracted from cells using Trizol reagent (TAKARA) and then was reverse-transcribed into cDNA. Real-time (RT) PCR was performed by RT-PCR reagent kit (TAKARA). And the results were calculated using the formulation 2-△△Ct. The primers were designed in PrimerBank as follows:
SOX2: Forward (5'-3')-GGATAAGTACACGCTGCCCG, Reverse (3'-5')-ATGTGCGCGTAACTGTCCAT.
CD133: Forward (5'-3')-TCCATGGCAACAGCGATCAA, Reverse (3'-5')-ATTGAGAGATGACCGCAGGC.
ALDH: Forward (5'-3')-GCACGCCAGACTTACCTGTC, Reverse (3'-5')-CCTCCTCAGTTGCAGGATTAAAG.
GAPDH: Forward (5'-3')-GCTGAGTACGTCGTGGAGTC, Reverse (3'-5')-GGGCAGAGATGATGACCCTT.
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4

Macrophage Activation by C. pyruviciproducens

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RAW264.7 cells were cultured in media containing 100/200/300/400/500 μg/ml heated-inactivated CP or 1/30/50/100/200 μg/ml CP-PGN for 3 hours. When the most appropriate concentration of CP or CP-PGN was selected, then treated with CP for 0.5/1/2/3/4/5/6/8/12 hours or CP-PGN for 0/1/3/8/12 hours to select the best stimulated time. RAW264.7 and peritoneal macrophages were stimulated with C. pyruviciproducens (200 μg/ml) or CP-PGN (50 μg/ml) for 3 hours. Total RNAs were isolated with Trizol (Invitrogen, Carlsbad, CA, USA) from cells according to the manufacture’s protocol. Total RNA (0.5 μg) was reverse transcribed into cDNA in 10 μl of reverse transcriptase reaction mixture using a RT-PCR reagent kit (Takara, Dalian, China). Quantitative real-time PCR technique (qRT-PCR) was performed on LightCycler480 (Roche Diagnostics, Indianapolis, IN) detection system using a SYBR Green1 qRT-PCR kit (Takara, Dalian, China). Gene expression was normalized against the reference gene β-actin. For PCR array analysis, relative gene expression levels were calculated compared with the average value of control group. The fowllowing factors were detected including TNF-α, IL-12, IL-10, iNOS and arginase-1.
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