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F 12 nutrient mixture ham

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The F-12 nutrient mixture (Ham) is a cell culture medium specifically formulated for the growth and maintenance of mammalian cell lines. It provides a balanced combination of amino acids, vitamins, and other essential nutrients required for cell proliferation and survival in vitro. The F-12 medium is widely used in various biomedical research applications involving cell biology, tissue engineering, and drug development.

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12 protocols using f 12 nutrient mixture ham

1

Cultivation of Synovial Sarcoma Cell Lines

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The samples of the human synovial sarcoma cell lines SYO-1 und 1273/99 were a donation from Dr. Marcus Renner, Institute of Pathology, University of Heidelberg.
SYO-1 synovial sarcoma cells were cultured in Dulbecco’s modified minimal essential medium (life technologies, Carlsbad, CA, U.S.A.) supplemented with 10 % FBS superior (Biochrom, Berlin, Germany), 100 U/ml Penicillin-Streptomycin (life technologies) and 0.5 % Sodium Pyruvate (Biochrom, Berlin, Germany).
1273/99 synovial sarcoma cells were cultured in F-12 Nutrient mixture (Ham) (life technologies) supplemented with 10 % FBS superior and 100 U/ml Penicillin-Streptomycin.
THP-1 cells (human acute monocytic leukemia cell line) and Jurkat cells (human T lymphocyte cell line) were cultured in RPMI Medium 1640 (with L-Glutamine; life technologies) supplemented with 10 % FBS superior and 100 U/ml Penicillin-Streptomycin.
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2

Flp-In Cell Line Cultivation

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The following Flp-In cell lines were obtained from Life Technologies: human embryonic kidney cells (HEK 293), Baby Hamster Kidney cells (BHK), Mouse (NIH Swiss) embryonic fibroblast cells (NIH-3T3), and Chinese Hamster Ovary (CHO) cells. HCT116FRT cells were kindly provided by J. Issa (denoted HCT116D in [33 (link)]). The Flp-In site location was determined by high-throughput sequencing experiments to be located at chromosome 12:1,332,729 bp (GRCh37/hg19 assembly; S19 Fig). HEK293FRT, and BHKFRT cell lines were cultured in DMEM high glucose (Life Technologies) supplemented with 10% fetal bovine serum (Life Technologies), and NIH-3T3FRT were cultured in DMEM high glucose supplemented with 10% bovine serum (Life Technologies). CHOFRT cells were cultured in F-12 Nutrient Mixture (HAM; Life Technologies) supplemented with 10% fetal bovine serum. HCT116FRT cells were cultured in MEM supplemented with 10% fetal bovine serum, non-essential amino acids, and sodium pyruvate (Life Technologies).
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3

Culturing Synovial Sarcoma and THP-1 Cells

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Human synovial sarcoma cells (cell line 1273/99, kindly provided by Dr. Marcus Renner, Institute of Pathology, University of Heidelberg), which harbor the SYT-SSX2 fusion gene [14 (link)], were cultured in F-12 nutrient mixture (Ham) (Life Technologies, Carlsbad, CA, USA) supplemented with 10% FBS superior and 100 U/mL Penicillin-Streptomycin. THP-1 cells (human acute monocytic leukemia cell line) were cultured in RPMI medium 1640 (with L-Glutamine; Life Technologies) supplemented with 10% FBS superior and 100 U/mL Penicillin-Streptomycin.
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4

Ginsenoside panaxatriol's anti-cancer effects

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Ginsenoside panaxatriol was obtained from Must Bio-Technology (Chengdu, China). PTX was purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s Modified Eagle Medium (DMEM) (11995-040), F-12 nutrient mixture (Ham) and fetal bovine serum (FBS) were bought from Life Technologies (Grand Island, NY, USA). MammoCul medium (human) and supplements were purchased from STEMCELL Technologies (Vancouver, BC, Canada). CellTiter-Glo luminescent cell viability assay kits were purchased from Promega Corporation (Madison, WI, USA). iScript gDNA Clear cDNA Synthesis Kits and iTaq Universal SYBR Green Supermix Kits were purchased from Bio-Rad Laboratories (Hercules, CA, USA). p-IRAK1 S376, IRAK1, p-P65 S536, P65, p-ERK1/2, ERK1/2, BAX, BCL-2 and MCL-1 antibodies were supplied by Cell Signaling Technology (Danvers, MA, USA). Beta-actin antibody was purchased from Sigma–Aldrich (St. Louis, MO, USA).
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5

Reagents and Antibodies for TLR2 Study

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Fetal calf serum (FCS), Dulbecco’s modified Eagle’s medium (DMEM), and F-12 nutrient mixture (HAM) were obtained from Invitrogen Corp. (Carlsbad, CA). The anti-TLR2 IgG clone T2.5 neutralizing antibody (MAb-mTLR2) and isotype mouse IgG1 were provided by Invivogen (San Diego, CA). The anti-His tag antibody (Ab18184) was purchased from Abcam (Cambridge, MA). All other chemicals were supplied by Sigma (St. Louis, MO).
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6

Agarose Microwell Arrays for hiPSC-EB Formation

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Agarose micro-well arrays were made using locally developed Teflon stamps and low melting point agarose (Sigma-Aldrich). The agarose, 40 g L−1, was dissolved in phosphate buffered saline (PBS) at 100 °C and pipetted into the culture ware. The Teflon stamps were pressed into the agarose solution for approximately 5 minutes. The agarose gelled in about 2 minutes and the stamp was withdrawn with resultant microwell arrays in the agarose gel substrate. After the agarose gelled, arrays were primed by incubation with EB differentiation medium (1:1 mixture IMDM and F-12 Nutrient Mixture (Ham) (Invitrogen), 5% fetal bovine serum (Invitrogen), 1% (vol/vol) insulin transferrin selenium-A supplement (Invitrogen), 55 μM monothioglycerol (Sigma-Aldrich), 100 U L−1 penicillin, and 0.1 mg L−1 streptomycin (Invitrogen) overnight at 37 °C and 5% CO2.
For hiPSC-EBs formation, 1.2 × 106 dissociated hiPSC in a 50 μl suspension were placed in each microwell array and allowed to sediment into the microwells. After 24-hour incubation at 37 °C, three-dimensional EB were aspirated from the microwells and transferred to a 35 mm tissue culture dish (BD Biosciences). The cells were kept in suspension culture in basal hepatocyte medium under gentle agitation on an orbital shaker at 37 °C and 5% CO2 with medium changes every other day.
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7

Overexpressing ALDH2 Variants in Neuroblastoma

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Human neuroblastoma SH-SY5Y cells were grown in Dulbecco’s modified Eagle’s medium supplemented with Nutrient mixture F-12 (Ham) (1:1, v/v) (Gibco, Gaithersburg, MD, USA), 2 g/L sodium bicarbonate (Sigma-Aldrich), 100 units/ml penicillin, 100 μg/ml streptomycin and 10 % fetal bovine serum (FBS). Cells were grown at 37°C in a humidified air with 5% CO2. SH-SY5Y cells were grown to 80–90 % confluence and then sub-cultured into different culture plates. The cDNAs of WT ALDH2 (GenBank ID: BC002967) and (E504K) ALDH2*2 mutant were constructed and subcloned into a mammalian expression vector pcDNA3 (Invitrogen) containing FLAG-tag sequences (DYKDDDDK). Both plasmids were transfected to SH-SY5Y cells using Lipofectamine 2000 (Invitrogen). Two days after transfection, SH-SY5Y cells stably expressing WT ALDH2 and mutant ALDH2*2 were selected in the presence of 1.5 mg/ml G418 (geneticin sulfate) (Sigma-Aldrich). Positive clones were confirmed by Western blot analysis as described below and maintained in the medium containing 1 mg/ml G418.
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8

Chondrogenic Differentiation of Mouse and Human Cells

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ATDC5 mouse cells (Riken Cell Bank, Ibaraki, Japan) were cultured in Dulbecco’s Modified Eagle Medium (DMEM) and Nutrient Mixture F-12 (Ham) (Gibco, Grand Island, NY, USA) supplemented with 5% fetal bovine serum (FBS; Gibco), 100 IU/mL penicillin, and 100 µg/mL streptomycin. ATDC5 cells were induced to chondrogenic differentiation using ITS (insulin (10 μg/mL), transferrin (10 μg/mL), and sodium selenite (3 × 10−8 M)), as described previously [31 (link),32 (link)]. SW1353 human chondrosarcoma cells (American Type Culture Collection, Manassas, VA, USA) were cultured in DMEM/F-12 media supplemented with 10% FBS, 100 IU/mL penicillin, and 100 µg/mL streptomycin. All cells were maintained at 37 °C in a humidified 5% CO2 atmosphere.
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9

H. pylori Regulation of IL-8 Promoter

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Cells, grown to a confluency of 90% in RPMI 1640 (Gibco, Karlsruhe, Germany) supplemented with horse serum (10%), were transfected with the human IL-8 promoter (gift of A. Sing) and pE1 (β-Galactosidase) at a rate of 10:1 using the Lipofectamine 2000 reagent (Invitrogen, Karlsruhe, Germany) according to manufacturer’s protocol. After incubation with the transfection solution, cells were washed and then starved for 12 h in Nutrient Mixture F12 (HAM; GIBCO). Following stimulation with H. pylori for 5 h, cells were harvested in lysis buffer (14 g/l K2HPO4, 2.67 g/l KH2PO4, 0.74 g/l EDTA, 1 g/l Triton X-100, 1 nM DTT) and luciferase activity was measured (MicroLumat Plus LB 96 V; Berthold Technologies, Bad Wildbad, Germany). The results were normalized to β-galactosidase levels measured using the β-Gal Assay Kit (Invitrogen) according to manufacturer’s instructions.
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10

Overexpressing ALDH2 Variants in Neuroblastoma

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Human neuroblastoma SH-SY5Y cells were grown in Dulbecco’s modified Eagle’s medium supplemented with Nutrient mixture F-12 (Ham) (1:1, v/v) (Gibco, Gaithersburg, MD, USA), 2 g/L sodium bicarbonate (Sigma-Aldrich), 100 units/ml penicillin, 100 μg/ml streptomycin and 10 % fetal bovine serum (FBS). Cells were grown at 37°C in a humidified air with 5% CO2. SH-SY5Y cells were grown to 80–90 % confluence and then sub-cultured into different culture plates. The cDNAs of WT ALDH2 (GenBank ID: BC002967) and (E504K) ALDH2*2 mutant were constructed and subcloned into a mammalian expression vector pcDNA3 (Invitrogen) containing FLAG-tag sequences (DYKDDDDK). Both plasmids were transfected to SH-SY5Y cells using Lipofectamine 2000 (Invitrogen). Two days after transfection, SH-SY5Y cells stably expressing WT ALDH2 and mutant ALDH2*2 were selected in the presence of 1.5 mg/ml G418 (geneticin sulfate) (Sigma-Aldrich). Positive clones were confirmed by Western blot analysis as described below and maintained in the medium containing 1 mg/ml G418.
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