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3 protocols using l 3h serine

1

Purification of P. pastoris Proteins

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The P. pastoris wild type strain (X-33), the pPICZB vector, zeocin, Ni-NTA agarose resin were from Invitrogen (Life Technologies Monza, Italy); PD-10 columns were from Cytiva Europe Gmbh (Milan, Italy); L-[3H]-glutamine and L-[3H]-serine were from Perkin Elmer (Milan, Italy); C12E8 was from TCI Europe (Zwijndrecht, Belgium); cholesterol, Amberlite XAD-4, egg yolk phospholipids (3-sn-phosphatidylcholine from egg yolk), Sephadex G-75, L-glutamine, L-serine, and all the other reagents were from Merck Life Science (Milan, Italy).
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2

Histidylation, Serylation, and Glycylation Assays

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The histidylation assay mixture contained 50 mM Tris-HCl (pH 7.7), 100 mM KCl, 10 mM MgCl2, 8 mM DTT, 2.5 mM ATP, 20 μM L-[14C] -histidine (PerkinElmer, 320 mCi/mmol) and 5 μM annealed tRNAHis(GUG). 50 nM HisRS or mutants were added to initiate the reactions. All the activity assays were performed with 5′-GMP tRNAs due to their higher activities as the substrates than that of the 5′-GTP tRNAs. The reaction was carried out at 60°C, and aliquots were removed at the designated time points, spotted onto 5% trichloroacetic acid (TCA)-soaked filter pads, and washed twice with 5% cold TCA as well as 95% ethanol. The filter pads were dried and the radioactivity was measured by scintillation counting.
The aminoacylation assays for hSerRS/hGlyRS were carried out under similar conditions to those of HisRS assays. hSerRS assays contained 50 mM Tris-HCl (pH 7.7), 100 mM KCl, 10 mM MgCl2, 8 mM DTT, 2.5 mM ATP, 20 μM cold serine, 1 μM L-[3H]-serine (PerkinElmer, 22 Ci/mmol), 10 μM annealed tRNASer(UGA), whereas that of hGlyRS contained 150 mM HEPES (pH 7.5), 20 mM KCl, 4 mM MgCl2, 2 mM DTT, 3 mM ATP, 20 μM cold glycine, 1 μM L-[3H]-glycine (PerkinElmer, 48.7 Ci/mmol) and 5 μM annealed tRNAGly(CCC). 200 nM hSerRS and 50 nM hGlyRS were added last, and all the reactions were performed at room temperature.
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3

Recombinant Protein Expression Optimization

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Protease inhibitor cocktail (P8849), Monoclonal Anti-polyHistidine-Peroxidase antibody (A7058), Amberlite XAD-4 (06444), egg yolk phospholipids, cholesterol, cholesteryl hemisuccinate (CHS), Sephadex G-75 (G75120), L-serine from Merck Life Science KGaA, Darmstadt, Germany; PD-10 desalting columns (17-0851-01), HisTRAP HP Ni2+ chelating columns (17524801), Superose 6 Increase 10/300 GL (29091596) from Cytiva, Milan, Italy; Isopropyl β-D-thiogalactopyranoside (IPTG, A4773) and Coomassie® Brilliant Blue R-250 from AppliChem, Milan, Italy; restriction endonucleases, T4 DNA ligase (EL0014), and Phusion™ High-Fidelity DNA Polymerase (F530S) from Thermo Fisher scientific; E. coli Rosetta(DE3) strain from Novagen, Milan, Italy; MegaMan Human Transcriptome Library, BL21(DE3) codon plus RIL strain from Agilent technologies, Milan, Italy; Lemo21(DE3) strain from New England Biolabs, Ipswich, MA, USA. L-[3H]-serine from Perkin Elmer, Waltham, MA, USA; C12E8 from TCI Europe, Zwijndrecht, Belgium.
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