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Thymidine thy

Manufactured by Merck Group
Sourced in Germany

Thymidine (Thy) is a pyrimidine nucleoside that is a component of DNA. It serves as a building block for the synthesis of DNA molecules.

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3 protocols using thymidine thy

1

Analytical Method for Antiretroviral Compounds

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Methanol (LC-grade), formic acid (for MS), ammonium formate (for MS) and thymidine (THY) were purchased from Sigma-Aldrich (Seelze, Germany). Zidovudine (ZDV) and zidovudine-d3 (ZDV-d3) were purchased from Toronto Research Chemicals (Toronto, Canada). Purified water was generated from a Merck Millipore Milli-Q-Integral 3-System (Darmstadt, Germany). Stock solutions of target analytes and surrogate standard solutions were prepared as listed in Table 1 and stored in the dark at −25 °C. Working solutions containing all analytes were prepared in methanol at 10, 1, 0.1 and 0.01 mg L−1, for surrogate standards at 1 mg L−1 and were stored at 4 °C.

Compounds, solvents and concentrations of stock solutions, retention times, MRM transitions (bold printed transitions are the most intense), declustering potential, collision energy, cell exit potential, dwell time, transition ratios and assignment of internal standards (IS).

Table 1
compoundstock solutions
LC/MS/MS-parameters
solventconcentration [g L−1]retention time [min][M+H]+MRM1MRM2DPCE1 [eV]CE2 [eV]CXP1 [V]CXP2 [V]dwell time [ms]Assignment of IS
THYH2O1.07.2243127110321744101050ZDV-d3
ZDVH2O1.011.2268127110341745101050ZDV-d3
internal standard
ZDV-d3MeOH0.111.1271130113311543101050
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2

Evaluating Cytotoxicity in p53-Dependent Cells

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HCT116 p53+/+ or HCT116 p53−/− cells were plated on 96-well, white, flat-bottom plates and allowed 48 h for the cells to adhere to the plate and begin to grow exponentially until reached about 25% confluency. F10 or 5-FU were added to their respective wells to give the final desired test concentrations. Exogenous uridine (Urd; Sigma, St. Louis, Missouri), thymidine (Thy; Sigma, St. Louis Missouri) or PBS was then added to their respective wells. The plates were then shaken for 2 min by hand to allow proper mixing without disrupting cell growth prior to placing them back in the incubator at 37 °C and 5% CO2. After 48 h in the incubator, cell viability, caspase 8, and caspase 3/7 activity was determined using respective Promega assay. The rescue experiments were done in triplicate with four data points in each experiment per tested condition. Graphs were generated using Microsoft Excel. Statistical significance was evaluated using unpaired, two-tailed t-tests performed using GraphPad Prism.
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3

Evaluating Cytotoxicity in p53-Dependent Cells

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HCT116 p53+/+ or HCT116 p53−/− cells were plated on 96-well, white, flat-bottom plates and allowed 48 h for the cells to adhere to the plate and begin to grow exponentially until reached about 25% confluency. F10 or 5-FU were added to their respective wells to give the final desired test concentrations. Exogenous uridine (Urd; Sigma, St. Louis, Missouri), thymidine (Thy; Sigma, St. Louis Missouri) or PBS was then added to their respective wells. The plates were then shaken for 2 min by hand to allow proper mixing without disrupting cell growth prior to placing them back in the incubator at 37 °C and 5% CO2. After 48 h in the incubator, cell viability, caspase 8, and caspase 3/7 activity was determined using respective Promega assay. The rescue experiments were done in triplicate with four data points in each experiment per tested condition. Graphs were generated using Microsoft Excel. Statistical significance was evaluated using unpaired, two-tailed t-tests performed using GraphPad Prism.
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