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4 protocols using bovine albumin

1

Preparation and Conjugation of Palmitate-BSA

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Bovine serum albumin (BSA) and palmitate conjugated to BSA were prepared according to a previously described protocol (52 (link), 54 (link), 55 (link)). Briefly, to prepare the BSA solution, 20% (w/v) fatty acid free bovine albumin (MP Biomedicals, Cat #0219477205) was gradually added to Ultra Pure water (Biological Industries, Cat #01-866-1A) at 52°C with gentle agitation until the BSA was fully dissolved, yielding a transparent yellow solution. To prepare a palmitate-BSA solution, 2.6% (w/v) of palmitic acid (Sigma-Aldrich, Cat #P0500) was added to 0.1 M NaOH (Sigma-Aldrich, Cat #221465) and heated to 70°C until fully dissolved, yielding a concentration of 100 mM. To conjugate palmitate to BSA, the 100 mM stock of palmitate in 0.1 M NaOH was added to 20% BSA at a ratio of 1:9 and heated at 55°C for 10 min. After conjugation, both the 20% (w/v) BSA solution and 10 mM Palmitate-BSA solutions were filter sterilized using a 0.45 μm PES filter (Celltreat, Cat #229709). Solutions were then aliquoted and stored at −20°C. Before use, solutions were warmed to 37°C. The total amount of BSA was held constant in all conditions by mixing ratios of fatty acid free BSA to palmitate-BSA as follows: BSA only (4:0), 0.1 mM palmitate-BSA (3:1), 0.2 mM palmitate-BSA (2:2), and 0.4 mM palmitate-BSA (0:4).
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2

Raman Spectroscopy for Biomolecular Reference Spectra

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Silicon chips (5×5mm; Ted Pella, Inc., Redding, CA) served as substrates for all Raman measurements performed herein. The following reagents were used to generate the reference spectra library: bovine albumin (MP Biomedicals; Solon, OH), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC; Avanti Polar Lipids, Inc., Alabaster, AL), 1,2-dioleoyl-sn¬-glycero-3-phsophocholine (DOPC; Avanti Polar Lipids, Inc., Alabaster, AL), DNA (from salmon sperm; AmResco Inc., Solon, OH), and cholesterol (ovine; Avanti Polar Lipid, Inc., Alabaster, AL). Polysorbate 20 (Bio-Rad Laboratories, Inc., Hercules, CA) was utilized as surfactant in diluent for albumin ink formulations. The following reagents were used to formulate HDL nanoparticle suspensions: 22A (PVLDLFRELLNELLEALKQKLK) was synthesized by Genscript (Piscataway, NJ), using solid-phase Fmoc (9-fluorenylmethyl carbamate) chemistry and purified with reverse phase chromatography (>95 % pure). 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) was purchased from NOF America Corporation and cholesterol was obtained from Sigma-Aldrich (St. Louis, MO).
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3

Embryonic Stem Cell Culture Protocol

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GS cells (kindly provided by Dr. Takashi Shinohara) were cultured on mitomycin C treated mouse primary embryonic fibroblast cells in StemPro-34 medium (Invitrogen) supplemented with StemPro supplement, 50 mg/ml insulin (Wako), 100 mg/ml transferrin, 60 mM putrescine, 30 nM sodium selenite, 6 mg/ml D(+)glucose, 1.8 mM sodium pyruvate, 1 ml/ml DL-lactic acid, 2 mM L-glutamine, 5 3 10 -5 M 2-mercaptoethanol, 10 -4 M ascorbic acid, 10 mg/ml d-biotin, 30 ng/ml b-estradiol, 60 ng/ml progesterone (Sigma), 5 mg/ml bovine albumin (MP Biomedicals), 1 x MEM vitaminE solution, 1 3 MEM nonessential amino acids solution, penicillin + streptomycin, 1% fetal calf serum, 10 ng/ml human bFGF, 15 ng/ml rat GDNF (PeproTech, Rocky Hill, NJ, United States of America). All trans retinoic acid was added to the culture medium at a concentration of 10 -7 M for the indicated duration in the presence of 50 mM Z-VAD-FMK (Calbiochem) to suppress apoptosis.
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4

Spectral Profiling of Biomolecules and Drugs

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To generate representative reference sample spectra, the chemical components of interest were dissolved in an appropriate solvent and an aliquot was transferred to the surface of a silicon chip. The solvent evaporated at room temperature leading to deposition of reference material in the form of thin dispersions on the surface of the chip. Protein, lipid, and nucleic acid reference spectra were acquired from dispersions of bovine albumin (MP Biomedicals, Solon, OH), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC; Avanti Polar Lipids, Inc., Alabaster, AL), and DNA (from salmon sperm; AmResco Inc., Solon, OH), respectively. The following drug compounds were procured from various sources: nilotinib (free base; LC laboratories, Woburn, MA), chloroquine (diphosphate salt; Sigma-Aldrich Inc., St. Louis, MO), and etravirine (Advanced ChemBlocks Inc., Burlingame, CA). Drugs were dissolved in methanol, spotted on silicon chips and allowed to dry; reference spectra were obtained from each dry dispersion.
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