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Prestained sds page standard

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Prestained SDS-PAGE standards are a set of pre-stained protein markers used to estimate the molecular weight of unknown protein samples during sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The standards are composed of a mixture of pre-stained proteins with known molecular weights, which are separated on the SDS-PAGE gel and provide a reference for determining the molecular weights of the proteins in the sample.

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7 protocols using prestained sds page standard

1

SDS-PAGE Analysis of Purified Enzyme

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SDS PAGE was performed on 500 L of pure and lyophilized enzyme according to
Laemmli et al21 (link)-23 (link, no link found) SDS PAGE
was carried out following the specifications provided by Invitrogen NuPAGE®. In
brief, 7.5 μL purified enzyme (5-25 μg protein) was mixed four times with 2.5 μL
LDS loading buffer (Invitrogen). After loading the sample onto precast NuPAGE
Novex 12% Bis-Tris 1.0 mm mini gels (Invitrogen). Following that, each gel run
was loaded with 5 μL of pre-stained SDS PAGE standards (Bio-Rad) with known
molecular weights. Electrophoresis was performed at room temperature for 45
minutes at a constant voltage of 200 V in a 1X solution of NuPAGE MOPS SDS
running buffer (Invitrogen) until the dye reached 60 mm of gel. Compositions of
buffers were determined using the manufacturer’s technical manual.24 (link)
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2

SDS-PAGE Protein Separation and Transfer

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SDS-PAGE was carried out in a linear gradient of 10–20% polyacrylamide gel (2.5% bis-acrylamide), as previously described [13 (link)]. Protein samples were denatured by the addition of 3.5% (w/v) SDS and 5% (v/v) mercaptoethanol and heating for 10 min at 70–80°C before being subjected to SDS-PAGE. Prestained SDS-PAGE standards (Bio-Rad Laboratories, USA) were used for immunoblot analyses. After SDS-PAGE, the polypeptides were electroblotted from gels onto polyvinylidene difluoride membranes (Immobilon-P, Millipore, USA). Transfer and immuno-detection of the blotted protein was carried out as described previously [13 (link)]. The secondary antibody was conjugated to alkaline phosphatase (Sigma, USA). Controls in which the primary and/or secondary antibodies were omitted during incubation did not reveal any bands.
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3

SDS-PAGE Protein Separation Protocol

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As shown in Table 1, MP mixtures prepared with RBPI and 7S-globulin, and preheating were used for SDS-PAGE using a Mini-PROTEAN 3 Cell system (Bio-Rad Laboratories, USA) with a 10% separating and a 4% stacking gels (0.375 M Tris, pH 8.8 and 0.125 M Tris, pH 6.8, respectively) (Laemmli, 1970 (link)). Electrophoresis was run at 150 V for 1.5 h with raw extracted protein samples diluted by sample buffer (4% SDS, 20% glycerol, 20% mercaptoethanol, and 0.125 M Tris, pH 6.8) to load the protein (1%, μg/μL) per each well. After run, the gels were dyed using Commassie Brilliant Blue R-250 (Bio-Rad Laboratories, Hercules, USA) during shaking for 30 min and then, de-stained 3 times with 1 h interval using a model RK-120 rocker (New Power Co., Korea). Standard marker consisting of pre-stained SDS-PAGE standards (Bio-Rad) was used to calculate the molecular weight of bands induced from each samples.
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4

Immunoblotting of Recombinant SAG1 Protein

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Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was carried out to separate purified rSAG1 protein on a 12% polyacrylamide gel along-with protein molecular marker as a standard (pre-stained SDS-PAGE standards, BioRad, Hercules, CA, USA). After electrophoresis, resolved proteins were transferred from gel to nitrocellulose membrane (Novex (USA), Invitrogen) which was then immune-blotted with anti-SAG1 antibodies or serum of T. gondii-infected mouse. The dilution of serum was made 1:200 in 5% skimmed milk-TNT (comprising 0.05% Tween-20, 140 mM NaCl, 15 mM Tris-HCl) [51] . Immunoblot was detected using anti-mouse IgG (Sigma-Aldrich, St. Louis, MO, USA) or anti-HIS antibodies (Invitrogen, Waltham, MA) with alkaline phosphatase. The dilution of anti-antibodies was made 1:1000 in 5% skimmed milk-TNT. The catalytic activity of alkaline phosphatase was detected by using liquid substrate system (Sigma-Aldrich, St. Louis, MO, USA) i.e. 5-bromo-4-chloro-3-indolyl phosphate/ nitroblue tetrazolium (BCIP/NBT).
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5

Protein Separation by SDS-PAGE

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Each sample (0.10 g) was solubilized in 1.0 mL of 9 M urea and an aliquot was added to a sample buffer containing Tris-HCl (0.6 M, pH 6.8), 2% SDS, 10% (vol/vol) glycerol, and 1.5% (wt/vol) DTT to obtain a final protein concentration of 4 mg/mL. Then, 10 μL of this solution was loaded on a 15% polyacrylamide pore gel (1.5 × 18 × 16 mm), and electrophoresis was carried out in a Hoefer SE 600 Series Ruby Standard Vertical Electrophoresis Unit (GE Healthcare BioSciences, Little Chalfont, UK), at 25 mA for 3 h at room temperature. The gels were stained with 0.25% (wt/ vol) CBB overnight (Candiano et al., 2004 ) and destained with water. Prestained SDS-PAGE standards (Bio-Rad, Richmond, CA) were used as protein molecular mass markers.
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6

Cell Culture and Protein Analysis

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RPMI 1640 medium, dimethyl sulfoxide, antibiotic/antimycotic (100×) solution, ampicillin, trypsin–EDTA (0.25%), penicillin–streptomycin–amphotericin, and FBS were purchased from Thermo Fisher Scientific (Waltham, MA, USA). A protein-estimation kit, acrylamide, ammonium persulfate, tetramethylethylene diamine, and prestained SDS-PAGE standard were from Bio-Rad (Hercules, CA, USA) and an enhanced chemiluminescence kit was procured from Thermo Fisher Scientific. Polyvinylidene difluoride membrane was procured from EMD Millipore (Billerica, MA, USA). All antibodies used in this study were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
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7

Characterization of Coffee Extracts by SDS-PAGE

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SDS-PAGE was done in 8% and 10% polyacrylamide separating gels (4% stacking gels) using a Mini-PROTEAN® Tetra vertical electrophoresis system and a PowerPac™ Basic Power Supply (BIO-RAD, Hercules, California, USA). Coffee enriched fractions (HMW F and LMW F), RCEs and GCEs were dissolved in Tris-HCl/SDS sample buffer (pH 6.8) containing 2-mercaptoethanol (50 g/L) and heated in a water bath for 3 min at 90 °C. In a second approach, electrophoresis was done under non-reducing conditions. Sample solutions (10 or 20 mg/mL, 16 μL) and a molecular weight marker solution (BIO-RAD prestained SDS-PAGE Standard, MW range 10-250 kDa,B10 μL) were each applied to a well.
After electrophoresis stacking at 25 mA and run at a constant voltage of 120V for 0.75 h, gels were silver stained according to the method of Heukeshoven and Dernick and interpreted.
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