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Biopharma compass 3

Manufactured by Bruker
Sourced in Germany

The BioPharma Compass 3.1.1 is a software suite developed by Bruker for the analysis and processing of biomolecular data. It provides tools for the visualization, processing, and reporting of data from various analytical techniques used in biopharmaceutical research and development.

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3 protocols using biopharma compass 3

1

HPLC-ESI-MS Analysis of Unknown Compounds

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HPLC-ESI-MS analysis was performed on Impact II QqTOF high-resolution mass spectrometer (Bruker Daltonik, Germany) with Elute UHPLC (Bruker Daltonik, Germany) on Intensity Solo 1.8 C18-2 2.1 × 100 mm 1.8 μm 90 Å reverse-phase column (Bruker Daltonik, Germany) with the following conditions: column flow 0.25 ml/min, gradient elution from 5 to 70% B in 25 min (A: 0.1% formic acid in water, B: 0.1% formic acid in AcN), column temperature 40°C, injection volume 5 μl, ESI source in positive mode, HV capillary at 4.5 kV, spray gas–nitrogen at 2.1 bar, dry gas–nitrogen at 8 l/min 220°C, scan range m/z 50–2200, 2-Hz scan rate for full scan, automatic MS/MS mode (CID) with dynamic scan rate 2–8 Hz, nitrogen as collision gas, collision energy from 23 eV at m/z 300 to 65 eV at m/z >1300, and automatic internal calibration with ESI-L low concentration tuning mix (Agilent Technologies, USA). Spectra were processed with BioPharma Compass 3.1.1 (Bruker Daltonik, Germany).
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2

HPLC-ESI-MS Analysis of Biomolecules

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High-performance liquid chromatography-electrospray ionization-mass spectrometry (HPLC-ESI-MS) analysis was performed with the Impact II QqTOF high-resolution mass-spectrometer (Bruker Daltonik, Germany), the UHPLC (Bruker Daltonik), and the Nucleodur C4 300-5 ec 4.6*150 mm column (Macherey-Nagel, Germany). Data acquisition conditions were as follows: flow 1 ml/min, split 1:10, gradient elution from 2% to 98% B in 40 min (A: 0.1% formic acid in water, B: 0.1% formic acid in acetonitrile), column temperature 40 °C, 30–50 µg of sample per injection, ESI source in positive mode, HV capillary at 4.5 kV, spray gas—nitrogen at 1.8 bar, dry gas—nitrogen at 8 L/min 220 °C. Spectra were processed with BioPharma Compass 3.1.1 (Bruker Daltonik, Germany).
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3

High-Resolution HPLC-MS/MS Analysis

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HPLC-MS/MS analysis was performed on Impact II QqTOF high-resolution mass-spectrometer (Bruker Daltonik, Germany) equipped with Elute UHPLC (Bruker Daltonik, Germany) on Intensity Solo 1.8 C18-2 2.1*100 mm 1.8 µm 90 Å reverse-phase column (Bruker Daltonik, Germany) with following conditions: column flow 0.25 mL/min, gradient elution from 30% to 100% B in 60 min (A: 0.1% (v/v) formic acid in water, B: 0.1% (v/v) formic acid in ACN), column temperature 40°C, injection volume 15 μL (1 µg/µL of dry sample in 60% (v/v) ACN), ESI source in positive mode, HV capillary at 4.5 kV, spray gas – nitrogen at 2.1 bar, dry gas – nitrogen at 8 L/min 220°C, scan range m/z 50-2200, 2 Hz scan rate for full scan, automatic MS/MS mode (CID) with dynamic scan rate 2-8 Hz, nitrogen as collision gas, collision energy from 23 eV at m/z 300 to 65 eV at m/z >1300, automatic internal calibration with ESI-L low concentration tuning mix (Agilent Technologies, USA). Spectra were processed with BioPharma Compass 3.1.1 (Bruker Daltonik, Germany).
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