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48 protocols using nci h28

1

Maintenance of Mesothelioma Cell Lines

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All MPM cell lines were maintained in a humidified atmosphere containing 5% CO2 in appropriate media supplemented with 10% Fetal Bovine Serum and penicillin streptomycin (500 U/mL). Cell culture reagents were purchased from Lonza (Walkersville, MD, USA). The following MPM cell lines were used in the study: LP9, Met5A, NCI-H2596, MMP, MMB, NCI-H2052, NCI-H28, Ju77, One58, RS-5, DM-3, ACC-MESO-1, ACC-MESO-4, Y-MESO-8D, Y-MESO-9, Y-MESO-12, Y-MESO-14, REN, NCI-H226, and MSTO-211H. ACC-MESO-1, ACC-MESO-4, Y-MESO-9, and Y-MESO-12 were generously provided by Yoshitaka Sekido, (Aichi Cancer Center Research Institute, Japan). NCI-H2052, One-58, and Ju77 cells were provided by Duncan Stewart (University of Leicester, UK). LP-9, MMB, and MMP were a generous gift from Warren Thomas (Royal College of Surgeons in Ireland, Dublin, Ireland). The REN and NCI-H226 cell lines were provided by Dean Fennell (Queen's University, Belfast, Northern Ireland). NCI-H28, and the immortalized non-tumorigenic mesothelial cell line, Met-5A were purchased from the ATCC (LGC Promochem, Teddington, UK). STR profiling of the NCI-H226 was conducted by Source Bioscience (Nottingham, UK) to confirm that the cell line had the correct genotype.
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2

Establishing Primary Peritoneal Mesothelioma Cell Lines

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The human primary peritoneal mesothelioma cells (MESO-II and STO) were derived from samples of patients who underwent surgery and provided by Dr. Zaffaroni (Molecular Pharmacology Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, Milano, Italy), as described previously [8 (link)]. The use of the patient samples to generate cell lines was approved by the Institutional Review Board of the Fondazione IRCCS Istituto Nazionale dei Tumori (INT). Written informed consent was obtained from all patients to donate the leftover tissue to INT after diagnostic and clinical procedures. The pleural MM (NCI-H2052, NCI-H28) cell lines and human dermal microvascular endothelial cells (HMEC-1; CRL-3243) were obtained from ATCC (Manassas, VA, USA). MESO-II and STO were cultured in Dulbecco’s Modified Eagle’s Medium F12 with 1 g/L glucose (Gibco, Thermo Fisher Scientific, Waltham, MA, USA). H28 and H2052 were cultured in RPMI 1640 medium with L-glutamine (Merck, Germany) supplemented with 10% Fetal Bovine Serum (FBS; Gibco, Thermo Fisher Scientific, Waltham, MA, USA) and 1% penicillin/streptomycin (Merck, Germany), at 37 °C, 5% CO2. HMEC-1 cells were cultured as described earlier [34 (link)].
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3

Establishment and Characterization of Mesothelioma Cell Lines

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Rat MM cell lines (EM 1–5 and SM 1–5) were established from the ascites of mesothelioma-bearing rats models conducted in our previous studies [26 (link)]. Regarding 8 human MM cell lines, four cell lines, ACC-MESO-4, Y-MESO-8A, Y-MESO-9 and Y-MESO-25 were established in our laboratory (Y.S.) [52 (link), 53 (link)]; NCI-H28 and MSTO-211H were purchased from ATCC (USA), and NCI-H290 and NCI-2052 were kindly provided from Dr. Adi F. Gazdar. Rat peritoneal mesothelial cells (RPMCs) were cultured from the omentum of Wistar rats, and full-length HPV16E6 and E7 were transfected for immortalization as previously described [54 (link)]. RPMC and rat/human mesothelioma cell lines were all maintained and used for experiments (except for conditioned medium preparation) in 1640 medium supplemented with 10% FBS and 1% antibiotic-antimycotic solution in a 5% CO2 incubator at 37°C. A line of immortalized mesothelial cells, MeT-5A, was purchased from ATCC and cultured in M199, according to the instructions. To prepare conditioned medium, subconfluent cultures of 1 × 106 cells were washed twice with PBS and incubated with serum-free medium for 24 h. Conditioned medium was collected and filtered through a 0.22 μm filter, the same amount of which was loaded for SDS-PAGE as described [26 (link)].
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4

Culturing Malignant Pleural Mesothelioma Cells

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Human malignant pleural mesothelioma cell lines MSTO-211H, NCI-H28, NCI-H2052, and NCI-H2452 were purchased from ATCC (Manassas, VA, USA). Cells were grown in RPMI-1640 medium supplemented with 0.003% (w/v) L-glutamine, 10% (v/v) heat-inactivated FBS, penicillin (final concentration, 100 U/mL), and streptomycin (final concentration, 0.1 mg/mL), and incubated in a humidified atmosphere of 5% CO2 and 95% air at 37°C.
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5

Establishment of Japanese Mesothelioma Cell Lines

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Nineteen Japanese MM cell lines, namely ACC-MESO-1, -4, Y-MESO-8D, -9, -12, -14, -21, -22, -25, -26B, -27, -28, -29, -30, -45, -48, -61, -72, and -76, were established in our laboratory as reported previously and described elsewhere, and the cells at 10–15 passages were used for assays.28 (link),29 (link) Four MM cell lines including NCI-H28, NCI-H2052, NCI-H2373, and MSTO-211H, and one immortalized mesothelial cell line, MeT-5A, were purchased from ATCC (Rockville, MD, USA), and cells at 3–5 passages were used. NCI-H290 and NCI-H2452 were the kind gifts of Dr. Adi F. Gazdar (Hamon Center for Therapeutic Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA). All MM cell lines and MeT-5A were cultured as described in Data S1. Malignant mesothelioma tissue samples from patients for the establishment of cell culture were obtained according to the Institutional Review Board’s approved protocol and with written informed consent from each patient.
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6

Malignant Pleural Mesothelioma Cell Lines

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Eleven human MPM cell lines were used in this study. ACC-MESO-1, Y-MESO-8A, Y-MESO-12, and Y-MESO-14 were established at the Aichi Cancer Research Center Institute (Nagoya, Japan).18 (link) NCI-H290 and NCI-H513 were provided by Dr. Adi F. Gazdar (University of Texas Southwestern Medical Center, Dallas, TX, USA). MSTO-211H, NCI-H28, NCI-H226, NCI-H2052, and NCI-H2452 were purchased from ATCC (Rockville, MD, USA). These cells were cultured in RPMI-1640 medium supplemented with 10% FBS (Life Technologies, Grand Island, NY, USA), 100 U/mL penicillin, and 100 mg/mL streptomycin (Meiji Seika Kaisha, Tokyo, Japan).
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7

Comprehensive Cancer Cell Line Database

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Human pancreatic carcinoma, PANC-1 (TKG 0606, p53 genotype: mutated), AsPC-1 (JCRB1454, null), MIA-PaCa-2 (TKG 0227, mutated) and BxPC-3 (JCRB1448, mutated) cells, and human esophageal carcinoma, TE-1 (TGK 0252, mutated at codon 272 Val to Met), TE-2 (TGK 0253, wild-type), TE-10 (TKG 0261, mutated at codon 242 Cys to Tyr), TE-11 (TKG 0262, wild-type), YES-2 (mutated at codon 236 Tyr to Asn) [19 ], YES-4 (wild-type) [20 (link)], YES-5 (mutated at codon 280 Arg to Gly) [20 (link)], YES-6 (wild-type) [20 (link)] and T.Tn (JCRB 0261, mutated at codon 214 His to Arg and 258 Glu to stop) cells were from Cell Resource Center for Biomedical Research (TKG number; Sendai, Japan), National Institutes of Biomedical Innovation, Health and Nutrition (JCRB number; Tokyo, Japan) or Dr. Yutaka Shimada (YES-2, YES-4, YES-5 and YES-6; Kyoto University, Kyoto, Japan). HEK293 cells (CRL-1573) and human mesothelioma, NCI-H2452 (CRL-5946, wild-type but truncated p53 protein), NCI-H2052 (CRL-5915, wild-type), NCI-H226 (CRL-5826, wild-type), NCI-H28 (CRL-5820, wild-type) and MSTO-211H (CRL-2081, wild-type) cells, were from ATCC (CRL number; Manassas, VA, USA). All the cells were cultured with RPMI 1640 supplemented with 10% fetal calf serum.
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8

Mesothelial Cell Line Culture Protocol

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MPM cell line NCI-H2052 (epithelioid), MSTO-211H (biphasic), NCI-H28 (sarcomatoid), and normal mesothelium cell line Met-5A were purchased from ATCC, US. Met-5A cells were cultured in Medium-199 (Gibco, US) with 10% fetal bovine serum (Gibco, US), and NCI-H2052, MSTO-211H cells NCI-H28 were cultured in RPMI-1640 (Gibco, US) with 10% fetal bovine serum (Gibco, US). Cells were cultured in an incubator under 5% CO2 at 37 °C.
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9

Maintaining Mesothelioma and HEK-293 Cell Lines

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MSTO-211H (ATCC®CRL-2081™), NCI-H28 (ATCC®CRL-5820™) and NCI-H2052 (ATCC®CRL-5915™) mesothelioma and HEK-293 cell lines (ATCC®CRL-1573™), were recently purchased from ATCC; IST-MES2 from the ISTGE Cell Repository. All cell lines were maintained in RPMI1640 (SigmaAldrich) except IST-MES2 and HEK-293, which were grown in DMEM (SigmaAldrich), with standard supplements and conditions and periodically tested with the PlasmoTest™—Mycoplasma Detection Kit (Invivogen, for the presence of mycoplasma which was eradicated with Plasmocin™—mycoplasma elimination reagent (Invivogen, Cat# ant-mpt) when necessary.
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10

Establishment and Authentication of Mesothelioma Cell Lines

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Human MPM cell lines, NCI-H28, NCI-H2052, NCI-H2596 (sarcomatoid) and NCI-H226, NCI-H2452 (epithelioid) were purchased from ATCC. Among other three epitheloid cell lines EMMeso was gifted by Dr. Tobias Peikert, Mayo Clinic and SPC111, SPC21223 (link) were established by Professor Rolf A. Stahel, University of Zurich, Switzerland and gifted by Dr. Jeremy Chien, University of New Mexico. All cells were authenticated by STR profiling and crosschecked with the ATCC data bank. Cells were grown in RPMI-1640 supplemented with 10% heat-inactivated fetal bovine serum (FBS) and 1% antibiotic in a humidified atmosphere at 37 °C, with 5% CO2. Virus transformed human mesothelium cell line Met-5A cells were also grown in RPMI-1640 with 10% FBS, epidermal growth factor (3.3 nM), hydrocortisone (400 nM), zinc-free bovine insulin (870 nM), and HEPES (20 mM)24 (link).
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