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JAM-A is a laboratory product developed by Santa Cruz Biotechnology for use in scientific research. It is a protein that plays a role in cell-cell adhesion. The core function of JAM-A is to facilitate the attachment and communication between cells.

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11 protocols using jam a

1

Validating EZH2 Inhibition by DZNep

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To confirm that successful inhibition of EZH2 was achieved by DZNep in mice, levels of EZH2 and H3K27me3 in splenocytes were examined using Western blot. Twenty μg of protein was separated by SDS-PAGE before electroblotting onto a nitrocellulose membrane. Blots were probed with anti-EZH2 or anti-H3K27me3 antibodies (both from Cell Signaling). B-actin (Sigma-Aldrich) and H3 (Cell Signaling) were used as loading controls. Since we previously showed that JAM-A is regulated by EZH2 and downregulated by DZNep in lupus CD4+ T cells (6 (link)), we also examined levels of JAM-A (Santa Cruz Biotechnology) in these cells. Densitometry was analyzed using ImageJ [27].
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2

Immunofluorescence Staining of Cell Markers

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Cells were plated onto coverslips in 6 well plates, fixed with 4% paraformaldehyde, blocked in donkey serum with 0.1% Triton X-100, and then incubated with the appropriate primary antibody (SerpinB3; PA5–30164 Invitrogen, 1:500, JAM-A; Santa Cruz sc-53623, 1:500, SOX2; R&D, MAB2018) followed by a species-specific secondary antibody. Secondary antibodies were as follows, donkey-anti mouse Alexa Fluor 555 (ThermoFisher) and donkey-anti rabbit Alexa Fluor 488 (ThermoFisher). The cells were then stained with Hoechst 33,342 (Invitrogen H3570, 1:3000) before being mounted with Vectashield (Vector Labs) onto glass cover slides and imaged using a confocal microscope.
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3

Endothelial Barrier Function Regulation

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Fibrinogen from human plasma (#F3879) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) reagent (#M5655) were purchased from Sigma-Aldrich, St. Louis, MO. DRP1 shRNA(h) lentiviral particles (#sc-43732-V), Control shRNA lentiviral particles-A (#sc-108080), and Polybrene® (#sc-134220) were purchased from Santa Cruz Biotechnology, Dallas, TX, USA. Antibodies were purchased from the following suppliers: against ZO-2 (#2847), phospho-DRP1[S616] (#3455), phospho-DRP1[S636] (#4867), and claudin-5 (#49,564) from Cell Signaling Technology, Danvers MA, USA; against JAM-A (#sc-53623) and occludin (#sc-133256) from Santa Cruz Biotechnology, Dallas, TX, USA; against β-actin (#A5441), and MFN2 (#M6444) from Sigma-Aldrich, St. Louis, MO, USA; against total DRP1 (#611,112) and OPA1 (#612,606) from BD Transduction Laboratory, San Jose, CA, USA; against PECAM-1 (#01004) from BiCell Scientific, Maryland Heights, MO, USA; against FIS1 (#ALX-210–1037) from Enzo Life Sciences, Inc, Farmingdale, NY, USA; and against VE-cadherin (#36–1900) from Invitrogen, Frederick, MD, USA.
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4

Immunofluorescence Staining of Cell Markers

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Cells were harvested and fixed in PBS containing 4% of formaldehyde and permeabilized with ice-cold (−20°C) methanol. Cells were blocked in PBS containing 0.1% Tween and 5% BSA; cells were incubated with primary antibodies Pancytokeratin (MA5-13156, Pierce Antibodies, 1:100 dilution), β-catenin (9582, Cell Signaling, 1:100 dilution), Occludin (33-1500, Life Technologies, 1:100 dilution), JAM-A (sc-25629, Santa Cruz, 1:100 dilution), MMP-9 (ab38898, Abcam, 1:100 dilution) overnight at 4°C. Cells were subsequently washed and incubated with secondary antibodies (goat anti-rabbit Alexa Fluor568, 1:500 dilution, and goat anti-mouse Alexa Fluor647, 1:500 dilution; Invitrogen) for 1 hour at room temperature. DAPI (0.5 μg/mL) was used to stain the nuclei. Prolong gold was added to preserve the fluorescent signal and to fix the slides. Pictures were analyzed with Imaris software.
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5

Western Blot Analysis of Cell Signaling

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Cells were harvested and solubilized in cell lysis buffer (Cell Signaling, Beverly, MA, USA) for 30 min at 4 °C. Protein concentration was measured using a Bradford protein assay kit (BioRad, Hercules, CA, USA). The same amounts of proteins from whole cell lysates were subjected to SDS polyacrylamide gel electrophoresis and transferred onto methanol-treated PVDF membranes (Millipore Co, Bedford, MA, USA). The membrane was immunoblotted with antibodies against phospho-Akt, VEGF, JAM-A (Santa Cruz, CA, USA), phospho-PKCβ, ZO-1 (Abcam, Cambridge, MA, USA), and β-actin (Sigma-Aldrich, St. Louis, MO, USA), respectively, overnight at 4 °C. The membranes were washed and incubated for 1 h at room temperature with HRP-conjugated secondary antibodies. After extensive washing, the bands were detected using an enhanced chemiluminescence (ECL) kit (Santa Cruz).
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6

Immunofluorescence Staining of Cell Markers

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Cells were plated onto coverslips in 6 well plates, fixed with 4% paraformaldehyde, blocked in donkey serum with 0.1% Triton X-100, and then incubated with the appropriate primary antibody (SerpinB3; PA5–30164 Invitrogen, 1:500, JAM-A; Santa Cruz sc-53623, 1:500, SOX2; R&D, MAB2018) followed by a species-specific secondary antibody. Secondary antibodies were as follows, donkey-anti mouse Alexa Fluor 555 (ThermoFisher) and donkey-anti rabbit Alexa Fluor 488 (ThermoFisher). The cells were then stained with Hoechst 33,342 (Invitrogen H3570, 1:3000) before being mounted with Vectashield (Vector Labs) onto glass cover slides and imaged using a confocal microscope.
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7

Western Blot Analysis of Ang-II Receptors and Endothelial Markers

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Cultures were rinsed with ice-cold PBS and collected with cell lysis buffer (Cell Signaling). Twenty to thirty μg proteins of cell lysates were loaded per lane on pre-made 4–20% SDS-polyacrylamide gel. After separation, the protein samples were transferred onto nitrocellulose membrane for detection. Primary antibodies to two types of Ang-II receptors (AT1 and AT2), JAM-A (Junctional adhesion molecular-A) and Mfsd2a (major facilitator superfamily domain containing 2A) are from Santa Cruz; antibodies to ZO-1 (zonula occludens-1) and Cav1 (Caveolin 1) are from Invitrogen; antibody to VE-Cad (vascular endothelial cadherin) is from Abcam; and antibodies to PPARalpha and phospho-PPARalpha (Ser12) are from GeneTex. The level of β-Actin was used as loading control. Horseradish peroxidase conjugated secondary antibody was used and the immune complexes were visualized by enhanced chemiluminescence (Amersham, Piscataway, NJ).
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8

Immunoblot Analysis of Cell Signaling

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Cells were lysed in RIPA buffer. Protein mixed with loading buffer and heated at 70°C for 10 minutes were loaded on SDS-polyacrylamide gels at 30 ug per lane. The proteins were transferred to PVDF (Millipore, Massachusett, USA) after electrophoresis. Membranes were blocked for 2 hours in 5% bovine serum albumin (BSA) and incubated overnight at 4°C with the SP rabbit polyclonal antibody against E-Cadherin (Sigma), α-Catenin (Sigma), Fibronectin (Cell signaling), Vimentin (Santa Cruz), JAMA (Santa Cruz), Akt (Cell signaling), ERK (Santa Cruz) and GAPDH (Santa Cruz). Membranes were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (1:1,000, Santa Cruz Biotechnology) for 1 hour at room temperature. Finally, bands were visualized by enhanced chemiluminescence (Thermo Scientific Pierce, Illinois, USA).
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9

Western Blot Analysis of Tight Junction Proteins

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Total protein was extracted from samples of hearts, lungs, and gastrocnemius muscles in RIPA buffer (Sigma-Aldrich, St. Louis, MO) and quantified using a Pierce BCA assay (ThermoFisher Scientific, Waltham, MA). Proteins were separated on 10% Bis-Tris NuPAGE gels in MOPS buffer (ThermoFisher) and transferred to Immobilon-P PVDF membranes (Millipore-Sigma). Blots were washed with Tris-buffered saline (TBS)-Tween 20 (10 mMTris, 0.9% NaCl, 0.1% Tween 20, TBS-T), blocked for non-specific binding with 5% nonfat milk in TBST, and incubated with primary antibodies to specific proteins, β-actin (Sigma-Aldrich A2668), ZO-1, occludin, claudin, and JAM-A (Santa Cruz Biotechnology, sc33725, sc133256, sc81796, and sc53624). Blots were washed in TBST and incubated with secondary antibodies (Cell Signaling Technology 7074, 98,164, and 91,196) linked to horseradish peroxidase (HRP). Protein bands were visualized using enhanced chemiluminescence (100 mM Tris pH 8.6, 0.2 mM p-coumaric acid, 1.25 mM luminol) documented with a FluorChemE imager (ProteinSimple, SanJose CA).
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10

Molecular Signaling in Tight Junctions

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Crystal violet was purchased from Sigma (#3886). The SR-3029 inhibitor was obtained from Glixx Laboratories Inc. Antibodies for CSNK1D (#sc-55553), CSNK1E (#sc-25423), Occludin (#sc-133256), JAM-A (#sc-53623) and GAPDH (#sc-365062) were from Santa-Cruz. Claudin-1 antibody (#13255), horseradish-peroxidase-conjugated anti-rabbit (#7074) and anti-mouse-IgG (#7076) were from Cell signaling.
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