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Pmod v 4

Manufactured by PMOD Technologies
Sourced in Switzerland

PMOD v.4.3 is a software application for the analysis of biomedical images. It provides tools for the visualization, registration, segmentation, and kinetic modeling of image data.

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10 protocols using pmod v 4

1

Quantitative Radiotracer Biodistribution

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Organ distribution of the radiotracer was determined in patient A by manually contouring the liver, gall bladder, kidneys, spleen, skeletal system, intestines, urinary bladder, and peripheral vein cannula (containing residual activity after tracer injection) in the CT for the attenuation correction using the PMOD software package (PMOD v4.0, PMOD Technologies LLC, Zurich, Switzerland). After subtracting remnant radiotracer activity in the peripheral venous catheter from the total prepared activity, the relative organ distribution (in %) could be calculated in relation to the determined organ volume in milliliter at 14 different time points (0.5, 1.5, 2.5, 3.5, 4.5, 5.5, 6.5, 7.5, 8.5, 9.5, 18, 30, 45, and 60 min after radiotracer injection). Mean and maximal standardized uptake values (SUVmean and SUVmax) were determined by manually placing volumes of interest (VOIs) over representative areas in the liver and gall bladder at the above-mentioned 14 time points and in the kidneys, spleen, skeletal system, intestines, and urinary bladder at 18, 30, 45, and 60 min after radiotracer injection. Additionally, VOIs were placed in the HCC tumor lesions and non-tumorous liver tissue to determine SUVmax and SUVmean. Measurements were performed on a syngo.via workstation (MM Oncology module, Siemens Healthineers, Erlangen, Germany).
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2

Dual-Phase 18F-FBB PET-MRI Protocol

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For the quantitative analysis, dual-phase 18F-FBB (0–10 min, 90–110 min) and R1 PET-to-3D T1 MRI coregistration were performed initially for each subject separately using PMOD v4.0 (PMOD Technologies Ltd., Zurich, Switzerland). Voxel-wise parametric R1 maps were generated using PXMOD v4.0 with SRTM2 and a fixed subject-specific k2′ extracted from the regional kinetic modeling toolbox (PKIN) (Ottoy et al., 2019 (link)). SRTM2 was chosen over SRTM because the former model has been shown to reduce noise (Wu and Carson, 2002 (link)). Volumes of interest (VOIs) were delineated using an automated maximum probability atlas method (3 probability maps of gray matter, white matter, cerebrospinal fluid) for segmentation of each subject’s MRI and the Automated Anatomical Labeling (AAL) atlas in PMOD. Interframe motion correction was performed for early dynamic images. All VOIs included the cortical gray matter target regions (frontal, parietal, lateral temporal, anterior and posterior cingulate, and occipital cortices), and the reference region (cerebellum). Dividing the standardized uptake values (SUVs) of the different target regions by that of the reference region resulted in regional SUV ratios (SUVRs) for eFBB and dFBB. The composite value was defined as the arithmetic mean of the values of all target regions (Barthel et al., 2011 (link)).
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3

In vivo Biodistribution and Tumor Targeting of [18F]F-FGFR1 in Xenograft Mice

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Xenograft mice (n=5) were fastly injected of 200 µl of [18F]F-FGFR1 (11.1 MBq) through tail vein. For the in vivo blocking study, RT-112 (FGFR1-high expression) tumor-bearing mice (n = 5) were injected with a tracer that was mixed with 200-fold (1.58 mg) unlabeled peptide to saturate the receptors in the tumors. Mice were anesthetized via 3% isoflurane inhalation (RWD Life Science Inc. China) for induction and 2% isoflurane inhalation for maintenance. Micro-PET/CT imaging was performed on a micro-PET/SPECT/CT machine (NOVEL MEDICAL Equipment Ltd. China). Whole-body scans were performed 30, 60 and 120 min after tracer administration. The CT scanning parameters were 80 kV, 0.5 mA, 2000 ms/frames, and 360 frames; the images were reconstructed with a 512*512 matrix and a slice thickness of 0.18 mm. PET images were acquired with a 140*140 matrix and 10 min of total acquisition time. Reconstructed images were processed with the comprehensive image analysis software Pmod v4.201 (PMOD Technologies LLC. Switzerland). The biodistribution of the major organs (brain, heart, lung, liver, kidney, bone and muscle) and tumor were analyzed by manually outlining the regions of interest (ROIs) of the entire organs and tissue at each time point of the micro-PET/CT scan. The radioactivity accumulated in bone and muscle was measured in the limbs without xenograft tumors.
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4

Preparation and Evaluation of 68Ga-FAPI-04

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The preparation of 68 Ga-Labeled FAPI-04 solutions was performed by previous method [22 (link)]. Briefly, 68 Ga was generated by a 68Ge–68 Ga generator and eluted with a solution of 0.1 M hydrochloride. The mixture of the 68 Ga solution (74 MBq), 1.0 M sodium acetate (95 μL) and 1.15 mM FAPI-04 (20 μL) were reacted at 95 °C for 10 min. 68 Ga FAPI-04 PET imaging was performed up to 60 min after intravenous injection of 11.1 MBq of 68 Ga-FAPI-04 in tumor xenograft mice (n = 3) using a micro-PET/SPECT/CT machine (Novel Medical Equipment Ltd., China) under isoflurane anesthesia. PET images were reconstructed with the comprehensive image analysis software Pmod v4.201 (PMOD Technologies LLC, Switzerland) and were converted to SUV images. Quantification was performed using a region-of-interest (ROI) technique and expressed as SUVmax.
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5

PET-CT Brain Imaging of Hypoxia in Rats

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The positron emission tomography–computed tomography (PET-CT) brain images were acquired using a preclinical PET-CT scanner (Sedecal, Madrid, Spain). The animals were fasted for 6 h before the PET scans. The static PET data were acquired at 30 min after tail vein injection of [18F] FDG (fluorodeoxyglucose) with about 18.5 MBq (range: 12.25~25.38 MBq, mean: 19.21 MBq, SD: 2.86 MBq). After the 20 min PET scan, a CT study was acquired for attenuation correction. PET image reconstruction was carried out using the 3D ordered-subset expectation maximization (3D-OSEM) algorithm.
The PET-CT scan was performed twice. The first scan was done one day after exposure to 10% O2 concentration for five days. The second scan was carried out one day after normal circumstances for five days. The spherical volumes of interest (VOI) with a 6 mm diameter were drawn in both the cerebral hemispheres, covering both the cortex and subcortex of the rat brain, on VivoQuantTM software. The mean standardized uptake values (SUVs) were measured and averaged, both of the left and right cerebral hemispheres. To quantify the FDG brain uptake (%ID/g) of each cerebral region (shown in Table 1), each PET image was transformed into the space of the PMOD (v4.1, PMOD Technologies, Switzerland) FDG rat brain template (W. Schiffer) (Figure 2).
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6

Analysis of 18F-FES Uptake in Brain

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18F-FES data were examined as distribution volume ratios (DVR) and standardized uptake value ratios (SUVR) using ROIs based upon anatomical labeling atlas (AAL3)58 (link) ROIs restricted to grey matter using a smoothed gray segment image from each participant’s volumetric MRI. The pituitary ROI was manually delineated on the coregistered anatomical MRI by two expert raters (A.P. and L.M.) using a 1 cm radius sphere, according to published criteria59 (link). ROI placement, thresholding, and sampling were conducted using PMOD v4.1 (PMOD Technologies).
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7

Quantitative Kinetic Modeling of Novel PET Tracers

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The Two-tissue-compartment models (2TCM) was used to describe tracer kinetics of [18F]Alfatide II and [11C]MET, where Cp denotes the concentration of tracer in arterial plasma, Ct represents the interstitial and intracellular free or non-specific binding components, and Cm signifies the specific components of the tracer. The transport and binding rates of the tracer are described as follows: The transfer from arterial plasma to tissue (K1 [mL/g/min]), tissue clearance (K2 [1/min]), the on-rate of specific binding (K3 [1/min]), and the target dissociation rate (K4 [1/min]).
Model equations are illustrated as: dCt(t)d(t)=K1CPt-K2+K3Ctt+K4Cmt dCm(t)d(t)=K3Ctt-K4Cmt
The values of K1–K4 are determined by fitting the model to the time–activity curve. The model equation was calculated quantitatively using the left ventricular region of interest (ROI) as CP, representing the arterial blood input function. To optimize the fit, Akaike information criterion (AIC) was employed for evaluating its efficiency (Watabe et al. 2006 (link)).
In terms of pharmacokinetics, the volume of distribution (VT) can be categorized into two components: specific volume of distribution (VS) and non-displaceable volume (VND), which represents the nonspecific distribution: VS=K1K3K2K4 VND=K1K2 VT=VS+VND=K1K2(1+K3K4)
All calculations were performed by the analysis software (PMOD v.4.3, PMOD technologies).
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8

In Vivo Brain Glucose Uptake Imaging

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We performed micro-PET scanning using a Siemens Inveon MicroPET/CT Scanner (Siemens Preclinical Solutions Inc., Erlangen, Germany) with the 30 min list mode acquisition protocol. Mice were fasted one hour before the IP injection of 200 ~ 270 μCi of fludeoxyglucose F18(18F-FDG) in 200 μl injection volume prepared the same day at the Mayo Clinic Nuclear Medicine Animal Imaging Resource [36 (link)]. CT-based attenuation corrections were applied. During the scan, mice were anesthetized by inhalation of ~ 2% isoflurane supplemented with oxygen. PET images were spatially normalized to the mouse brain PET template [37 (link)] using PMOD v4.3 (PMOD technologies, Zurich, Switzerland). Then, brain 18F-FDG uptake was calculated as standard uptake value ratio (SUVR) with the cerebellum as referencing tissue. For group-wise comparisons, regional SUVRs were calculated as the average uptake over the total voxels in the region of interest (ROI).
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9

Dynamic PET-MRI Imaging of 4NQO-induced Tumors

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Animals (4NQO n=4, control n=2) were anesthetized by inhaling 4% Isoflurane (in O2), after which anesthesia was maintained at 1.8-2% for up to two hours during imaging procedure. The animals were placed prone on a dedicated heated mouse holder (MINERVE, Esternay, France) and 60 min whole-body dynamic PET imaging (PET/MRI 7T, MR solutions, Guildford, UK) was performed following i.v. application of 6.3 ± 0.3 MBq [18F]-fluorodeoxyglucose ([18F]FDG). Simultaneously, high resolution head MRI was performed in the same device applying T1- and T2-weighted fast spin echo (FSE). The radiosynthesis of [18F]FDG was performed according to standard clinical procedure at the PET Imaging Center Tromsø and approximately 1 GBq of the patient batch was used for the animal studies.
The list-mode data were reconstructed into 24x5 s -8x60 s, 10 and x300 s time frames using 3D ordered subset expectation maximization with 1 iteration, 32 subsets, VOXEL size 0.42 mm, applying correction for random coincidences-, decay-, deadtime- and scatter-correction. Subsequently, the hyper-intense lesion was segmented (PMOD v4.3, PMOD Technologies, Zurich, Switzerland) by placing a region of interest (ROI) using the MR information.
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10

PET Pharmacokinetic Modeling of [18F]FDG

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The MRI-based ROI was used to extract the [18F]FDG activity concentration (Bq/ml) on the PET data. PET pharmacokinetic modeling was applied using the irreversible 2TCM (PMOD v.4.3, PMOD technologies) and its suitability evaluated by Schwartz Criterion (SC), Akaike Information Criterion (AIK) and Model Selection Criterion (MSC). Furthermore, rate constants were calculated for K1, k2, k3, and macro parameters MRGlu and Flux derived. The image derived input function (idIF) was segmented from the inferior vena cava as it provides a robust estimation of the idIF (28 (link)) with special regard to the spill-in contamination from neighboring tissue when using the heart (29 (link)).
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