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13 protocols using goat anti rat igg

1

Western Blot Analysis of Protein Expressions

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Western blot was performed as previously described [29 (link)]. Briefly, the cells were lysed in radioimmunoprecipitation assay (RIPA) buffer consisting 2% protease inhibitor cocktail (Roche) and 1% phosphatase inhibitor (Roche) to obtain the protein. After that, BCA protein assay kit was used to test the protein concentrations. Thirty-five micrograms of total protein of each sample was subjected to SDS-PAGE. After electrophoresis, proteins were transferred to a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% nonfat milk and incubated with anti-AKR1C1 (Abcam, Cambridge, UK), anti-PPARγ, anti-RUNX2, anti-PGR, anti-AR, or anti-GAPDH (Cell Signaling Technology, Beverly, MA, USA) in Tris-buffered saline-Tween 20 (TBST) at 4 °C overnight. After that, the membrane was washed with TBST buffer, incubated with goat anti-rabbit IgG or goat anti-rat IgG (Abcam), and then washed with TBST again. At last, an ECL Western blot kit (CWBIO) was used to visualize the bands.
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2

Immunohistochemical Detection of Lin28A/B

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After dewaxing, the sections were subjected to antigen retrieval by high-pressure heating and then exposed to 3% H2O2 for 10 min. After blocking, the sections were incubated with primary antibody for Lin28A (1:100; rabbit, Abcam, ab279647) or Lin28B (1:100; rabbit, Abcam, ab191881) overnight at 4°C, followed by incubation with goat anti-rat IgG (1:200; Abcam) at 37°C for 20 min. After incubation with diaminobenzidine (DAB), the sections were counterstained with hematoxylin. The slides were evaluated by light microscopy (Nikon Eclipse E100).
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3

Immunofluorescence and Flow Cytometry Analysis of Angiogenic Biomarkers

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Expression of PDGFRβ, NG2, or α-SMA in cells was detected by flow cytometry. Cells were incubated with primary antibody for 1 h at room temperature followed by further incubation with secondary antibody for 30 min (if needed) prior to analysis with a flow cytometer. For immunofluorescence, the tumor grafts were sectioned under freezing conditions immediately after removal from the mice. To localize the expression of biomarkers in tumor blood vessels, tumor tissues were co-stained with antibody against PDGFRβ, NG2, or α-SMA and antibody against CD31, followed by observation under a fluorescence microscope. The primary antibodies included rat anti-mouse CD31 and PE-mouse anti-human PDGFRβ (Biolegend, San Diego, CA), goat anti-human PDGFRβ (R&D, MN), and rabbit anti-human PDGFRβ, rabbit anti-human NG2, and rabbit anti-human α-SMA (Abcam, Burlingame, CA). Secondary antibodies included donkey anti-rabbit IgG (DyLight 488) and goat anti-rat IgG (DyLight 550) (Abcam, Burlingame, CA). An isotype antibody was used as a control.
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4

Immunohistochemical Analysis of Gαq in Zebrafish

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The testis, ovary, and hypothalamus of zebrafish were fixed with 4% paraformaldehyde for 24 h at 4°C, dehydrated in graded alcohols, cleared in toluene, and embedded in paraffin wax. Serial transverse sections 5 µm thick were dried at 60°C for 2 h and placed on glycerin/albumin-coated slides. Dewaxed sections were rehydrated and washed in phosphate buffered solution (PBS), then incubated with PBS containing 3% hydrogen peroxide for 30 min to quench endogenous peroxidase activity. Next, the sections were incubated with Gαq antibody (ABclonal, China) overnight at 4°C. For the negative control, normal pre-immune rabbit serum was used to replace the Gαq antibody. The sections were then washed thrice with PBST and incubated with goat-anti-rat IgG (Abcam, Britain 1:5,000) at 37°C for 45 min. Following this, DAB chromogenic solution (Maxim, China) was used for 3–10 min, and hematoxylin (BaSO, China) was applied for 1 min to stain the nucleus. The sections were photographed by an Olympus microscope (Olympus, Japan). The protein sample of the zebrafish brain tissue was prepared as described before (Xiong et al., 2017 (link)). Western blot assay was then applied to verify the specificity of the commercial Gαq antibody. The detailed WB protocol was referred to in a previous study (Xiong et al., 2017 (link)).
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5

Quantifying Mononuclear-Macrophages and Neutrophils in Leptospira-Infected Tissues

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The lung, liver and kidney tissue samples from Leptospira-infected mice mentioned above were fixed with 4% formalin and then embedded and sectioned. CD11b or Ly6G has been considered as mouse peripheral blood-derived mononuclear-macrophage or neutrophil surface makers, respectively [41 (link),42 (link)]. Using 1:100 diluted rabbit anti-mouse CD11b or rat anti-mouse Ly6G-IgG as the primary antibody (Abcam) and 1:1000 diluted HRP-conjugated goat anti-rabbit-IgG or goat anti-rat-IgG as the secondary antibody (Abcam), an immunohistochemical method was used to detect the mononuclear-macrophages and neutrophils in the tissues from peripheral blood. The stained mononuclear-macrophages and neutrophils (brown) per mm2 section were quantitatively estimated using Image-Pro Plus software (Nikon, Japan) [43 (link)–45 (link)]. In the detection, the mice injected with EMJH liquid medium were used as the control. In addition, the efficiencies of the CD11b-IgG and Ly6G-IgG were determined using M-CSF-induced Ms-macrophages and Ms-neutrophils from peripheral blood before use.
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6

Western Blotting and IHC Antibodies for Inflammation

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Antibodies used for western bloting included F4/80 (rat monoclonal, Abcam, ab16911; 1:200), CD11b (rabbit monoclonal, Abcam, ab133357; 1:1000), LY6C (rat monoclonal, Novus, NBP2-00441; 1:1000), MCP-1 (rabbit polyclonal, Cell Signaling Technology, #2029; 1:1000), NLRP3 (rabbit monoclonal, Cell Signaling Technology, #15101; 1:1000), pro-Caspase1 (rabbit monoclonal, Abcam, ab179515; 1:1000), GSDMD (rabbit monoclonal, Abcam, ab209845; 1:1000), IKK (rabbit monoclonal, Abcam, ab178870; 1:1000), phospho-IKK (rabbit monoclonal, Cell Signaling Technology, #2697; 1:1000), p65 (mouse monoclonal, Sabta cruz, sc-8008; 1:200), phospho-p65 (rabbit monoclonal, Cell Signaling Technology, #3033; 1:1000), IĸBα (mouse monoclonal, Cell Signaling Technology, #9246; 1:1000), phospho-IĸBα (mouse monoclonal, Cell Signaling Technology, #4814; 1:1000), GAPDH (mouse monoclonal, Abcam, ab8245; 1:8000), Goat Anti-Mouse IgG (Abcam, ab97023; 1:10000), Goat Anti-Rabbit IgG (Abcam, ab97051; 1:10000) and Goat Anti-Rat IgG (Abcam, ab97057; 1:10000). Antibodies used for immunohistochemistry and immunohistochemistry-frozen included F4/80 (rat monoclonal, Abcam, ab16911; 1:50) and LY6C (rat monoclonal, Novus, NBP2-00441; 1:200). LPS, IFN-γ, IL-4, IL-10 and M-CSF were purchased from PeproTech, ATP and nigericin were purchased from Med Chem Express.
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7

Immunohistochemical Characterization of Cardiac Cells

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Immunohistochemical assessments were carried out on frozen cardiac tissue. Briefly, sections were fixed in 4.2 % paraformaldehyde (BD Biosciences, San Jose CA) for 15 mins, followed by permeabilization and blocking with normal goat serum for 30 minutes at room temperature. Slides were incubated with primary antibodies (Abcam, Cambridge, MA): rabbit anti-CD133 (Catalog # ab19898; used at 1:25), rat anti-CD45 (Catalog # ab30446; used at 1:25), and mouse anti-SSEA-4 (Catalog # ab16287; used at 1:20). The sections were then washed with PBS-Tween, and then incubated with all three secondary antibodies (Abcam, Cambridge, MA) at room temperature for 30 minutes: goat anti-rabbit IgG (Alexa Fluor 488; Catalog # ab150081; used at 1:200), goat anti-rat IgG (Alexa Fluor 647; Catalog # ab150167; used at 1:200), goat anti-mouse IgG (Alexa Fluor 555; Catalog # ab150118; used at 1:200). The sections were finally incubated with 0.1% Sudan Black B (Sigma Aldrich, St. Louis, MO) for 30 minutes. ~20 adjacent areas were imaged at 40x magnification using Nikon Confocal Microscope A1 (Nikon, Tokyo, Japan) in the University of Kentucky Confocal Microscopy facility. Cell numbers were expressed as cells/high power field (HPF). Cell numbers are expressed as cells/HPF.
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8

Multicolor Immunostaining of Tumor Vasculature

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The primary antibodies used here included rat anti-mouse CD31 antibody (Biolegend, CA, USA), mouse anti-human CD31 antibody and rabbit anti-human PDGFRβ antibody (Abcam CA, USA). The secondary antibodies were goat anti-rat IgG (DyLight 550), donkey anti-rabbit IgG antibody (DyLight 488 or DyLight 550), and goat anti-mouse IgG (DyLight 550) (Abcam, CA, USA). Tumor tissues derived from patients or mice were frozen, sectioned and fixed with 2 % formaldehyde for 4 min. Subsequently, the tissues were incubated with primary antibody at 37°C for 1.5 h followed by incubation with the corresponding secondary antibody at 37°C for 0.5 h. In addition, the tissues were washed with PBS 4 times prior to incubation with either primary antibody or secondary antibody. The nuclei of cells were visualized using DAPI staining.
To localize the recombinant proteins on PDGFRβ-expressing cells in tumors, FAM-labeled proteins were intravenously injected into mice bearing LS174T tumor xenografts. Subsequently, the tumor xenografts were removed at 5, 30, and 60 min post-injection and frozen and sectioned followed by staining with anti-PDGFRβ antibody or anti-CD31 antibody.
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9

Tracing Mature Myelinating Oligodendrocytes

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To trace the labelled cells, immunohistochemistry evaluation of PLP expression was performed for specifi c mature myelinating oligodendrocytes. Firstly, after the deparaffi nization and rehydration, they were blocked with 10 % goat serum and then they were incubated with anti-PLP overnight. The slides were incubated with a secondary antibody (goat antirat IgG, Abcam, UK) for 1 h at room temperature and then washed with PBS. The extension of demyelination and remyelination intensity of PLP staining was evaluated and quantifi ed.
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10

Quantifying Neutrophil NETosis Mechanisms

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105 isolated human or mouse neutrophils were seeded on glass coverslips in tissue-culture plates and incubated with PMA (100 ng/ml, Sigma-Aldrich), Ionomycin (1 µM, Sigma-Aldrich), or 5 × 103C. albicans preformed hyphae for 2.5 h at 37°C. Cells were then fixed with 4% paraformaldehyde, permeabilized with 0.01% TritonX-100 for 10 min, and blocked with 5% donkey serum for 30 min at room temperature. Cells were stained with goat polyclonal anti-MPO (R&D systems), rabbit polyclonal anti-CitH3 (Abcam), and combined rat anti-S100A8 and anti-S100A9 (clone 10 and clone 46 respectively, kindly provided by C. Urban, Umeå, Sweden). Secondary antibodies were donkey anti-goat IgG (Jackson ImmunoResearch), goat anti-rat IgG (Abcam), and goat anti-rabbit IgG (Jackson ImmunoResearch). The PKH26 Red Fluorescent Cell Linker Kit (Sigma-Aldrich) was used to stain lipids of the neutrophil plasma membranes. DNA was stained with 4′,6′-Diamidino-2-phenylindole dihydrochloride (DAPI, Sigma-Aldrich) and NETs were visualized using a Leica SP8 inverse confocal microscope and analyzed with FIJI software.
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