The largest database of trusted experimental protocols

9 protocols using guanosine 5 monophosphate

1

Biochemical Composition Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sucrose (the sugar), the bitter caffeine, the amino acids L-Aspartic acid, L-Glutamic acid, L-Glutamine, L-Lysine, L-Asparagine, L-Arginine, L-Methionine, L-Glycine, L-Threonine, L-Valine, L-Proline, L-Leucine, L-Phenylalanine, L-Histidine, L-Isoleucine, L-Serine, L-Glutamic acid monosodium salt (MSG), the ribonucleotides Inosine 5′-monophosphate (IMP) and Guanosine 5′-monophosphate (GMP) were purchased from Sigma Aldrich (Milwaukee,USA). All the chemicals are of analytical grade (>99.5%).
+ Open protocol
+ Expand
2

Quantitative Analysis of Purine Metabolites

Check if the same lab product or an alternative is used in the 5 most similar protocols
Inosine 5′‐monophosphate disodium (IMP), guanosine 5′‐monophosphate (GMP), adenosine 5′‐monophosphate (AMP), hypoxanthine (Hx), and inosine (In) were purchased from Sigma‐Aldrich (Shanghai, China). Lactic acid, succinic acid, and 5‐sulfosalicylic acid dihydrate were obtained from Aladdin Chemical Reagent Co., Ltd. (Shanghai, China). A ninhydrin coloring solution kit for Hitachi and a MCl buffer L‐8500‐PH kit were purchased from Wako Pure Chemical Industries, Ltd., Japan. Perchloric acid, n‐hexane, methanol, potassium phosphate monobasic, ammonium phosphate dibasic, and the other common chemicals were obtained from Nanjing Chemical Reagent Co., Ltd.
+ Open protocol
+ Expand
3

Biochemical Analysis of Nucleotides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adenosine, adenine, inosine, cytosine, guanine, cytidine, Adenosine 5′-monophosphate (AMP), guanosine 5′-monophosphate (GMP), NAD and cytidine 5′-monophosphate (CMP) were purchased from Sigma Chemical Company. Nicotinamide and nicotinic acid were purchased from Merck. DEAE-Sephadex A-25 and Sephadex G-100 were from Pharmacia Fine Chemical. All other reagents were prepared in Microbial Chemistry Department, National Research Centre.
+ Open protocol
+ Expand
4

Quantitative Analysis of Monophosphate Nucleotides

Check if the same lab product or an alternative is used in the 5 most similar protocols
The qualitative analysis of monophosphate nucleotides was performed as reported by Yamaoka et al. [19 (link)]. LC–MS was performed under the following conditions: instrument, Waters UPLC™ and system with an electrospray ionization (ESI) interface and a quadrupole mass detection system (Waters, Milford, MA, USA); software, MassLynxTM; column, ACQUITY UPLC™ Column HSS T3 (2.1 mm ID and 100 mm length, 1.8-μm particle size) (Waters, Milford, MA, USA). The ESI source was operated at 120 °C with a desolvation temperature of 450 °C, 800 L/h desolvation gas flow rate, and a capillary voltage set at 3.5 kV. The cone voltage was 30 V and collision energies 30 eV. Integration and quantitation were performed using the Waters MassLynxTM software. Detection of these compounds was performed in the negative ionization. Monophosphates nucleotides (xanthosine 5’-monophosphate (XMP), cytidine 5’-monophosphate (CMP), uridine-5’-monophosphate (UMP), thymidin-5’-monophosphate (TMP), adenosine-5’-monophosphate (AMP), inosine 5’-monophosphate (IMP), guanosine-5’-monophosphate (GMP)), were purchased from Sigma–Aldrich (Wrocław, Poland). All data were obtained in triplicate. The results were expressed as mg/100 g of dry weight (d.w.).
+ Open protocol
+ Expand
5

Apoptosis Induction Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Trovafloxacin, spironolactone, dexamethasone, spermidine, fructose 1,6-bisphosphate, dihydroxyacetone phosphate, inosine 5’-monophosphate, and guanosine 5’-monophosphate were obtained from Sigma. UDP-glucose was obtained from Abcam and Annexin V-Pacific Blue was from BioLegend. 7AAD, TO-PRO-3, anti-CD11b-PE (clone M1/70), anti-CD11c-PE (clone N418), and anti-CD16/CD32 (clone 93) were obtained from Invitrogen. Antibodies specific for mouse CD95 were obtained from BD. Human anti-Fas (clone CH11) was obtained from Millipore. Other reagents were obtained as follows: ABT-737 (abcam), TRAIL (Sigma), and zVAD-FMK (Enzo).
+ Open protocol
+ Expand
6

Nucleotide Synthesis and Lipid Purification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adenosine 5′-monophosphate (AMP), uridine 5′-monophosphate (UMP), guanosine 5′-monophosphate (GMP), cytidine 5′-monophosphate (CMP), and ribose 5′-monophosphate (rMP) were purchased as disodium salts from Sigma-Aldrich (Bangalore, India) and used without further purification. The phospholipid, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), was purchased from Avanti Polar Lipids Inc. (Alabaster, AL, USA). All other reagents used were of analytical grade and purchased from Sigma-Aldrich (Bangalore, India).
+ Open protocol
+ Expand
7

Apoptosis Induction Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Trovafloxacin, spironolactone, dexamethasone, spermidine, fructose 1,6-bisphosphate, dihydroxyacetone phosphate, inosine 5’-monophosphate, and guanosine 5’-monophosphate were obtained from Sigma. UDP-glucose was obtained from Abcam and Annexin V-Pacific Blue was from BioLegend. 7AAD, TO-PRO-3, anti-CD11b-PE (clone M1/70), anti-CD11c-PE (clone N418), and anti-CD16/CD32 (clone 93) were obtained from Invitrogen. Antibodies specific for mouse CD95 were obtained from BD. Human anti-Fas (clone CH11) was obtained from Millipore. Other reagents were obtained as follows: ABT-737 (abcam), TRAIL (Sigma), and zVAD-FMK (Enzo).
+ Open protocol
+ Expand
8

Quantitative Analysis of Matsutake Metabolites

Check if the same lab product or an alternative is used in the 5 most similar protocols
Eighty dried samples of T. matsutake were collected in accordance with official sampling requirements [19 ] from the mountain areas of Xiaojin County, Jiulong County, Yajiang County, Kangding County, Muli County, and Lixian County in Sichuan Province, China. Fifteen authentic standards of adenosine (A), cytidine (C), guanosine (G), inosine (I), thymidine (T), uridine (U), xanthosine dehydrate (X), 2′-deoxyadenosine (dA), 2′-deoxycytidine (dC), 2′-deoxyguanosine (dG), 2′-deoxyuridine (dU), adenosine 5′-monophosphate (AMP), cytidine 5′-monophosphate (CMP), guanosine 5′-monophosphate (GMP), and uridine 5′-monophosphate (UMP) were obtained from Sigma-Aldrich (St. Louis, MO, USA). The Milli-Q water purification system was used to prepare ultra-pure water for the UPLC analysis (Millipore, Bedford, MA, USA). The solvent ammonium acetate, acetonitrile, and diethylamine with LC-MS grade for UPLC-MS analysis were also purchased from Sigma-Aldrich (Sigma-Aldrich, St.Louis, MO, USA). Other chemicals and solvents of analytical grade were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
+ Open protocol
+ Expand
9

Mononucleotide Preparation and Mica Cleaning

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sources of mononucleotides: adenosine 5′-monophosphate (Sigma-Aldrich), uridine 5′-monophosphate (P-L Biochemicals), guanosine 5′ monophosphate (Sigma-Aldrich), cytidine 5′-monophosphate (Sigma-Aldrich). We used ultra-pure deionized water (Milli-Q) from a Millipore system to prepare 10 mM solutions of the nucleotides. All solutions were filtered using Pierce™ Protein Concentrators PES, 3K MWCO, 0.5 mL, centrifuged at 14,000 rpm.
Mica was purchased from SPI Supplies (Mica grade v-4). Scotch tape was used to repeatedly cleave the mica until a complete cleavage was achieved after 3–5 times. In addition to the controls described in the text, we ran blind tests with wet-dry cycles using only Milli-Q water to verify the cleaning procedures. This assured that the polymers and rings were not due to an unknown contaminant in the water.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!