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The MCF-7 is a cell line derived from a breast adenocarcinoma. It is a commonly used model in cancer research and drug discovery.

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845 protocols using mcf 7

1

Evaluating Proline Depletion in MCF-7 Breast Cancer Cells

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Breast cancer cell line MCF-7 was obtained from ATCC (HTB-22, ATCC, Manassas, VA, USA). The MCF-7 and MCF-7shPRODH/POX cells were maintained in DMEM and 5% fetal bovine serum (FBS, Gibco, Thermo Fisher Scientific, Waltham, Massachusetts, USA), 50 IU/ml penicillin (Gibco), and 50 μg/ml streptomycin (Gibco) at 37 °C in a humidified atmosphere in the presence of 5% CO2. Description of the preparation of MCF-7shPRODH/POX cell line was included in supplementary data (Supplemental Experimental Procedures, Supplementary Figure 1). In the experimental conditions 80% of confluent MCF-7 and MCF-7shPRODH/POX cells were cultured in glutamine-free DMEM (Gibco) (in order to avoid proline generation from glutamine) and treated for 24 h with substrate for prolidase, GlyPro (17,22 μg/ml).
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2

Overexpression of miRNA in MCF7 Cell Line

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Human breast cancer cell line MCF7 was purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). Stable miRNA overexpressing MCF7-miR526b and MCF7-miR655 cell lines were established as previously described [9 (link),10 (link)]. MCF7, MCF7-miR526b, and MCF7-miR655 cells were all grown in minimal essential medium (MEM) (Life Technologies, Thermofisher, Ottawa, ON, Canada) supplemented with 10% fetal bovine serum (FBS) and 1% Penstrep. Furthermore, MCF7-miR526b and MCF7-miR655 cell lines were sustained with Geneticin (Life Technologies Thermofisher, Ottawa, ON, Canada) at 200 ng/mL.
HUVECs were purchased from Life Technologies and grown in Medium 200 (GIBCO, ON) supplemented with low serum growth supplement (LSGS) kit (GIBCO, Toronto, ON, Canada) containing 2% FBS, hydrocortisone (1 µg/mL), human epidermal growth factor (10 ng/mL), basic fibroblast growth factor (3 ng/mL), and heparin (10 µg/mL). All cell lines were maintained in a humidified incubator at 37 °C with 5% CO2.
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3

Stable miRNA Overexpression in MCF7 Cells

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Human breast cancer cell line MCF7 was purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). Stable miRNA-overexpressing MCF7-miR526b and MCF7-miR655 and empty vector-transfected cell line MCF7-Mock were established by overexpression of miRNA plasmids as previously described [8 (link),9 (link)]. MCF7-Mock, MCF7-miR526b, and MCF7-miR655 were grown in complete RPMI 1640 media (Gibco, ON, Canada) with 10% fetal bovine serum (VWR, ON, Canada) and 1% Pen-Strep. Stable miRNA-overexpressed cells and Mock (empty vector-transfected) cells received Geneticin (G418) at a concentration of 200 ng/ml (Biobasic, ON, Canada) and incubated at 37 °C in humid conditions and with 5% CO2. Once cell confluency reached 90%, the cells were harvested for RNA extraction.
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4

Breast Cancer Cell Line Manipulation

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Human normal breast cell line MCF‐10A and BC cell lines MCF‐7 and MDA‐MB‐468 were acquired from American Type Culture Collection (Manassas, VA, USA). MCF‐10A cells were cultured in MEBM BulletKit (Lonza, Basel, Switzerland). MCF‐7 and MDA‐MB‐468 cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Invitrogen, Sigma, Louis, Missouri, MO, USA) supplemented with fetal bovine serum (FBS, 10%, Sigma), streptomycin (100 μg/mL, Sigma), and penicillin (100 U/mL, Sigma). These cells were kept in a moist atmosphere with 5% CO2 at 37°C.
Small interference (si) RNA targeting circ_0000518 (si‐circ_0000518) and corresponding control (si‐NC), as well as miR‐326 mimic and inhibitor (miR‐326 and anti‐miR‐326) and their matching negative controls (miR‐NC and anti‐miR‐NC), were obtained from GenePharma (Shanghai, China). The overexpression vectors of FGFR1 (pcDNA‐FGFR1) and circ_0000518 (circ_0000518) were established via cloning the full‐length sequence of FGFR1 or circ_0000518 into the pcDNA3.1 vector (pcDNA‐NC) (Invitrogen, Carlsbad, CA, USA) or pcD‐ciR (Geneseed Biotech Co., Ltd., Guangzhou, China) (Vector). BC cells (MCF‐7 and MDA‐MB‐468) were transfected with oligonucleotides or vectors using Lipofectamine 3000 reagent (Life Technologies, Grand Island, NY, USA).
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5

Comprehensive Analysis of Breast Cancer Cell Lines

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The partitions (AC n-hexane, IC n-hexane, and IC ethylacetate), and the AC n-hexane-ethylacetate fraction were obtained from our previous study [8 (link)]. The HPLC grade of methanol, acetonitrile, and phosphate buffer pH 7.4 were used as the mobile phase, whereas the stationary phase used C18 column. The MMP9 enzyme kit was obtained from BioVision and comprised lyophilized MMP9, FRET-based MMP9 substrate (Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg), MMP9 assay buffer, and NNGH inhibitor (N-isobutyl-N-(4-methoxyphenylsulfonyl)-glycyl hydroxamic acid) as its positive control. MDA-MB-231, MCF7, T47D, and 4T1 cells were obtained from Parasitology Laboratory, Medical Faculty, Gadjah Mada University), and cultured in Dulbecco’s Modified Eagle Media (DMEM) for MDA-MB-231, MCF7, and T47D, and RPMI-1640 medium containing 10% (v/v) fetal bovine serum (FBS) and 1% penicillin–streptomycin was used as the media for 4T1 (Life Technologies, Carlsbad, CA, USA) at 37 °C in a 5% CO2 humidified incubator. RNase was courtesy from Parasitology Laboratory, Medical Faculty, Gadjah Mada University and cultured in Dulbecco’s Modified Eagle Media (DMEM). Doxorubicin (DOX) and 3-(4,5-dimethylthiazol-zyl)-2,5-diphenyl tetrazolium bromide (MTT) were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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6

Breast Cancer Cell Line Transfection

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The normal breast tissue cell line, MCF-10A, and the MCF7, T47D and MDA-MB-231 breast cancer cell lines were obtained from the American Type Culture Collection (Manassas, VA, USA). MCF-7 and T47D cells were cultured in Dulbecco's modified Eagle's medium (DMEM; Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA), and MDA-MB-231 cells were cultured in RPMI-1640 supplemented with 10% fetal bovine serum (FBS; both Invitrogen; Thermo Fisher Scientific, Inc.). MCF-10A cells were cultured in DMEM-F12 supplemented with 5% horse serum (Invitrogen; Thermo Fisher Scientific, Inc.). The cells were incubated in an atmosphere containing 5% CO2 at 37°C. Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) was used for transfection to transfected into MCF-7 or MDA-MB-231 cells. The relative small interfering (si)RNAs targeting SOX5 (si-SOX5-1 and si-SOX5-2) or enhancer of zeste 2 polycomb repressive complex 2 subunit (EZH2) or negative control and G418 were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany). SOX5 and vector plasmid were purchased from Genepharma (Shanghai, China). The 70% confluence of MCF-7 or MDA-MB-231 cells were achieved overnight prior to transfection. In each group, 2 µg oligonucleotide were used for transfection. At 48 h following transfection, the cells were harvested for experimentation.
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7

Culturing Breast Cancer Cell Lines

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Breast cancer cells (MCF-7; drug sensitive, DS) and TAX-resistant breast cancer cells (MCF-7/TAX; drug resistant, DR) were purchased from The Cell Bank of Type Culture Collection of The Chinese Academy of Sciences and Procell Life Science & Technology Co., Ltd., respectively. The MCF-7 and MCF-7/TAX cells were cultured in Dulbecco's modified Eagle's medium (DMEM; Thermo Fisher Scientific, Inc.) containing 10% fetal bovine serum (FBS; Thermo Fisher Scientific, Inc.) and 100 U/ml penicillin/100 µg/ml streptomycin (Thermo Fisher Scientific, Inc.), and maintained in an incubator containing 5% CO2 at 37°C.
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8

Modulating miR-135 in Breast Cancer Cells

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Human breast cancer cell lines MDA-MB-468, MDA-MB-231 and normal epithelial cell line MCF-10A were purchased from the Cell Type Culture Collection of the Chinese Academy of Sciences (Shanghai, China) and routinely maintained in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) with 10% fetal bovine serum (FBS; Gibco; Thermo Fisher Scientific, Inc.) and human breast cancer cell line MCF-7 was cultured in RPMI 1640 medium. All cells were incubated in a humidified 5% CO2 atmosphere at 37°C. The miR-135 mimic, miR-135 inhibitor or scrambled miRNA control which expressed green fluorescent protein (GFP) were transfected to the MDA-MB-468 and MCF-7 cells with Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer’s protocol. The sequences were as follows: miR-135 mimic forward, 5′-UAU GGC UUU UCA UUC CUA UGU GA-3′ and reverse, 5′-ACA UAG GAA UGA AAA GCC AUA UU-3′; miR-135 inhibitor forward, 5′-UCA CAU AGG AAU GAA AAG CCA UA-3′ and reverse, 5′-CAG UAC UUU UGU GUA GUA CAA-3′; and scrambled miRNA control forward, 5′-UUC UCC GAA CGU GUC ACG UTT-3′ and reverse, 5′-ACG UGA CAC GUU CGG AGA ATT-3′. A total of 2 days later, cells were collected and stored at −80°C.
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9

Breast Cancer Cell Line Transfection

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The human breast cancer cell lines MCF-7 and MDA-MB-231 were sourced from Wuhan Procell Life Science and Technology Co., Ltd., (Wuhan, China). We propagated MCF-7 cells in minimum Eagle’s medium (MEM), supplemented with 10% fetal bovine serum (Gibco, USA), 0.01 mg/mL insulin, 100 U/mL penicillin G, and 100 μg/mL streptomycin. MDA-MB-231 cells were grown in Dulbecco’s modified Eagle’s medium (DMEM), supplemented with 10% fetal bovine serum (Gibco, USA), 100 U/mL penicillin G, and 100 μg/mL streptomycin. Both cell lines were incubated in a 5% CO2 atmosphere at 37°C. To assess the effect of AL133467.1, Lipofectamine™ 3000 (Invitrogen, USA) was used to transfect pcDNA-AL133467.1/pcDNA (negative control) into MCF-7 and MDA-MB-231 cells according to the Lipofectamine™ 3000 reagent protocol. Functional assays were performed, and RNA was collected 48 h after transfection.
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10

Breast Cancer Cell Line Cultivation

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Two different types of human breast cancer cell lines were used. The first was MCF-7 cells, a model human breast cancer cell line, which was purchased from Bioresource Collection and Research Center (BCRC, Taiwan), and the second was MCF-7/Adr cells, a human breast cancer multidrug resistant (MDR) cell line, which was kindly provided by Professor Jun-Jen Liu (Taipei Medical University, Taiwan). In addition, L929 human fibroblast cell lines were purchased from BCRC, Taiwan, for in-vitro toxicity examination.
MCF-7 cells were cultured in Minimum Essential Medium (Gibco; Invitrogen, Waltham, MA, USA) containing L-Glutamine, 2.2g/L sodium bicarbonate, 0.1mM non-essential amino acids solution, 1.0 mM sodium pyruvate, 10% fetal bovine serum (FBS), and 1% penicillin/streptomycin (PS). MCF-7/Adr cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco) containing 10% FBS and 1% PS. L929 cells were cultured in RPMI containing 10% FBS and 1% PS. All cell lines were maintained in a humidified atmosphere with 5% CO2 in a 37˚C incubator and the culture medium was replaced every 2–3 days.
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