The largest database of trusted experimental protocols

19 protocols using sc 7294

1

Investigating Tat Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
J-Lat cells were cultured in the presence (P/I) or absence (CM) of mitogens for 6 h. Whole protein extracts were then digested with RIPA buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, and 1 mM EDTA) supplemented with protease inhibitors (Sigma-Aldrich). Extracts before immunoprecipitation were used as controls to ensure that all samples contained the same starting material (input). Extracts were subjected to immunoprecipitation with a rabbit polyclonal anti-Tat antibody (ab43014, Abcam) (0.1 μg/mL) using magnetic protein G beads (Dynabeads, Invitrogen). Protein–protein interactions between the transcription factors NFAT2 and Tip60 and HIV-1 Tat were examined using Western immunoblotting with a mouse monoclonal antibody to NFAT2 (sc-7294, Santa Cruz) and a mouse monoclonal antibody to Tip60 (sc-166323, Santa Cruz). An extract of J-Lat cells expressing NFAT and Tip60 without antibody (-Ab) was used as a negative control. A goat anti-rabbit IgG HRP-conjugated antibody (sc-2004, Santa Cruz) and a goat anti-mouse IgG HRP-conjugated antibody (sc-2005, Santa Cruz) were used as secondary antibodies.
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Bone Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical staining was performed as described earlier [18 (link)]. The left femur was fixed, demineralized, embedded in paraffin, and appropriately sectioned. Then, sections were deparaffinized with xylene, rehydrated in gradient alcohol, and stained with hematoxylin and eosin (H&E). For IHC staining, section slides were incubated overnight at 4 °C with primary antibodies against NOX-1 (abcam, #ab131088), 4HNE (Santa Cruz, #sc130083), cathepsin K (Santa Cruz, #sc48353), or NFATc1(Santa Cruz, #sc7294) and then with HRP-conjugated secondary antibodies. Next, endogenous peroxide was blocked with 3% hydrogen peroxide and incubated with EnVision+ System-HRP (DAKO, Glostrup, Denmark, #K4065). For visual analysis, the product was stained with diaminobenzidine (DAB) and counterstained with Mayer’s hematoxylin. All the acquired images were assessed with Image J (National Institutes of Health, Bethesda, MD, USA).
+ Open protocol
+ Expand
3

Immunofluorescence Staining of Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were fixed in 4% PFA overnight at 4C. Samples were then washed for 15 minutes on a rocker 3 times with PBS, permeabilized with 0.2% Triton-X 100 (VWR International, Radnor, PA) for 10 minutes, and washed another 3 times with PBS. Samples were incubated overnight at 4C in a 1% BSA (Rockland Immunochemicals, Inc., Gilbertsville, PA) blocking solution followed by another 4C overnight incubation with either rabbit anti-human E-cadherin 1:100 (Abcam, ab53033), mouse anti-human phospho-Sp1 1:100 (Abcam, ab37707), mouse anti-human vimentin 1:100 (Invitrogen, V9), and rabbit anti-human NFATc1 (Santa Cruz, sc-7294) 1:100. After 3 washes for 15 minutes with PBS, samples were exposed to Alexa Fluor 488 or 568 conjugated (Invitrogen), species specific secondary antibodies at 1:100 in 1% BSA for 2 hours at room temperature. Three more washes with PBS for 15 minutes were followed by incubation with either DRAQ5 far red nuclear stain (Enzo Life Sciences, Plymouth Meeting, PA) at 1:1000.
+ Open protocol
+ Expand
4

ChIP-PCR Analysis of NFAT Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
For each ChIP assay, 5–8 × 106 WT pro-B cells were used following the Miltenyi Biotech ChIP protocol. Eight micrograms of NFATc1 (Santa Cruz Biotech; sc-7294) or GST (A-6; Santa Cruz Biotech) Abs were used for immunoprecipitation o/n at 4 °C. Protein-DNA complexes were precipitated, and DNA fragments bound to NFATc1 or GST were purified. The purified DNA fragments were used in PCR assays to amplify the Ebf1 promoter region bound to NFATc1 or GST. Primer sequences used to detect the Ebf1 promoter region are available in Supplementary Table 1.
+ Open protocol
+ Expand
5

Protein Expression Analysis in Bone Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
L2 to L3 vertebral bone tissue proteins were extracted using a cell lysate buffer as described previously.(28) p53, p21, p16, collagen 1, NFATc1, cathepsin K, and Nox4 protein expression in bone tissue were assessed by standard Western immunoblotting using antibodies recognizing these proteins, followed by incubation with secondary antibodies conjugated with horseradish peroxidase. Anti‐p53, Ms, monoclonal, #ab28 (Abcam, Cambridge, UK); anti‐p21, Rb, monoclonal, #ab109199 (Abcam); anti‐p16, Rb, monoclonal, #ab108349 (Abcam); anticollagen 1 (Col‐1a), Ms, monoclonal, #MA1‐26771 (Thermo Fisher Scientific, Waltham, MA, USA); anti‐NFATc1, Ms, monoclonal, #sc‐7294 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); anticathepsin K, Rb, polyclonal, #ab19027 (Abcam); anti‐Nox4, Rb, polyclonal, #ABC459 (Millipore, Billerica, MA, USA); and anti‐βActin, Ms, monoclonal, #A1978 (Sigma‐Aldrich, St. Louis, MO, USA). β‐actin protein in bone tissue was analyzed by immunoblotting, using mouse monoclonal antibody recognizing β‐actin (Sigma‐Aldrich), followed by incubation with a secondary antimouse antibody conjugated with horseradish peroxidase (Santa Cruz Biotechnology). Immunoblots were visualized using SuperSignal West Pico chemiluminescent (Pierce, Rockford, IL, USA). Quantitation of the intensity of the bands in the autoradiograms was performed using a VersaDoc imaging system (Bio‐Rad).
+ Open protocol
+ Expand
6

Mouse Femur Histological Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mouse femurs were harvested and fixed in 4% paraformaldehyde for 2 days, and decalcified uisng 10% ethylenediaminetetraacetic acid, embedded in paraffin, then cross-sectioned (5 μm) on the rotary microtome (RM2235, Leica, Germany). Hematoxylin and eosin (HE) staining was conducted as the previous study (Zhang et al. 2018 (link)). The differentiation of osteoclasts was measured by TRAP staining. Bone sections were labeled with Masson staining according to the manufacturer’s protocol (Sigma-Aldrich, Missouri, USA). Immunohistochemical (IHC) staining was performed as previously described (Zhao et al. 2021 (link)). The primary antibody against NFATc1 (sc-7294, 1:200) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Five fields were randomly selected per section and photographed.
+ Open protocol
+ Expand
7

Western Blot Analysis of Osteoclast Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
RAW 264.7 cells were lysed by radioimmunoprecipitation assay buffer with protease inhibitor cocktail (Cell Signaling Technology) at 0–4°C. The protein concentrations for each sample were measured, and 20 µg protein lysates from each sample were subjected to 8 or 12% sodium dodecylsulfate-polyacrylamide gel electrophoresis, and the separated proteins were transferred onto polyvinylidene difluoride membranes. These blots were blocked with Tris-buffered saline containing 0.05% Tween-20 (TBST), supplemented with 5% non-fat dry milk for 1 h at room temperature, and incubated with primary antibodies (mouse nuclear factor of activated T-cells cytoplasmic 1 (NFATc1) antibody (1:2000, sc-7294, Santa Cruz Biotechnology), rabbit TRAP antibody (1:10000, ab191406, Abcam), mouse cathepsin K antibody (1:1000, sc-48353, Santa Cruz Biotechnology), mouse Cyclin D1 antibody (1:1000, sc-8396, Santa Cruz Biotechnology), and mouse α Tubulin antibody (1:10000, sc-23948, Santa Cruz Biotechnology)) overnight at 4˚C. After the incubation with primary antibodies, the membranes were washed with TBS-T and incubated with horseradish peroxidase-conjugated secondary antibodies at room temperature for 1 h. Peroxidase labeling was detected with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific). The relative expression levels of proteins for western blotting were normalized to α Tubulin.
+ Open protocol
+ Expand
8

Protein Extraction and Analysis from C2C12 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
We use RIPA lysis buffer containing 1 mM PMSF to lyse C2C12 cell or muscles. For the nuclear or cytoplasmic protein extraction, proteins were isolated according to the procedure of the nuclear extraction kit (Solarbio, SN0020). Protein concentration was determined using a BCA protein assays kit. After sodium dodecyl sulfate (SDS)–polyacrylamide gel electrophoresis gels, primary antibodies were used, including rabbit anti‐β‐tubulin (bs‐1482M, 1:5,000, Bioss), rabbit anti‐SUNCR1 (NBP1‐00861, 1:1,000, Novus), mouse anti‐MyHC I (ab11083, 1:1,000; Abcam), rabbit anti‐MyHC IIa (ab124937, 1:1,000, Abcam), goat anti‐MyHC IIb (sc‐168672, 1:500; Santa Cruz), mouse anti‐PGC‐1α (ST1202, 1:1,000, Millipore), rabbit anti‐histone (4499S, 1:2,000; CST), mouse anti‐NFAT (sc‐7294, 1:500; Santa Cruz), rabbit anti‐NRF‐1 (#12381s, 1:2,000, CST), rabbit anti‐calcineurin (#2614s, 1:2,000; CST), rabbit anti‐Myoglobin (ab77232, 1:1,000, Abcam), and rabbit anti‐MEF2A (#97365, 1:2,000; CST). Protein expression levels were determined using MetaMorph software (ImageJ, National Institutes of Health, USA).
+ Open protocol
+ Expand
9

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples for Western blotting were collected and stored in T-PER (Thermo Fisher Scientific) at −80 °C until use. The samples were homogenized in ice-cold T-PER with Cell Destroyer (Bio Medical Science), and the total protein concentration was determined using BCA protein assays (Thermo Fisher Scientific). Equal amounts of protein (3 to 5 µg of protein sample per well) were loaded on 10% sodium dodecyl sulfate–polyacrylamide electrophoresis gels (SuperSep Ace) and transblotted to polyvinylidene fluoride membranes. The membranes were incubated in blocking buffer (Blocking One, nacalai tesque) for 1 h and then overnight with primary antibodies, including mouse anti-NFATc1 at 1:5,000 dilution (sc-7294, Santa Cruz); rabbit anticalcineurin at 1:5,000 dilution (GTX59619, CST); mouse anti-MyoD at 1:1,000 dilution (sc-377460, Santa Cruz); guinea pig anti-p62/SQSTM1 at 1:5,000 dilution (GP62-C, PROGEN); and mouse antiβ-actin at 1:5,000 dilution (A5441, Sigma-Aldrich). Primary antibodies were detected by incubation with the appropriate secondary antibody for 1 h at room temperature and then with the ECL Prime Western Blotting Substrate (GE Healthcare) for 5 min. Protein expression was measured using WSE-6100LuminoGraph I (ATTO). The densities were measured using ImageJ software (NIH).
+ Open protocol
+ Expand
10

CBD Modulates Immune-related Transcription Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five hundred thousand B16-F10 cells were seeded in the circle microscope cover glasses and cultured overnight. CBD (Ca2+ (high)) at a CBD concentration of 0, 2.5, and 4 µg/mL were co-incubated with the cells for 2 h. After the removal of the medium, the cover glasses were fixed with 4% paraformaldehyde. Then, the cells were then permeabilized with Triton X-100 (0.1%, v%) for 15 min, followed by the addition of a blocking solution consisting of bovine serum albumin (BSA, 1%) and incubated at room temperature for 30 min. Next, all samples were incubated with the primary antibodies at room temperature for 12 h, followed by staining with the corresponding secondary antibodies in dark for 1 h. The primary antibodies included ATF3(ab207434, Abcam) and NFATc1(sc-7294, SANTA CRUZ). The following secondary antibodies included IgG (H + L) Fluor 555-conjugated (A0460, Beyotime) and IgG (H + L) Fluor 647-conjugated (A0468, Beyotime). Nuclei were labeled with DAPI (BL105A, Biosharp) at room temperature for 5 min. After washing with PBS thoroughly, immunofluorescence images were then acquired with a multiphoton confocal microscopy (STELLARIS 8 DIVE, Leica).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!