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9 protocols using cd56 fitc

1

Surface Marker Staining of γδTc

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For surface marker staining of γδTc, the following anti-human antibodies from BioLegend, unless otherwise indicated, were employed: TCRγδ PE (clone B1, 1:25); TCR Vδ1 FITC (Miltenyi, clone REA173, 1:10); TCR Vδ2 PerCP (clone B6, 1:25); NKG2D APC (BD Biosciences, Mississauga, ON, Canada, 1:25); CD56 FITC (clone MEM-188, 1:5); CD69 AF700 (clone FN50, 1:4); CD94 FITC (clone DX22, 1:5); CD95 APC (clone DX2, 1:100); HLA ABC PE (clone W6/32, 1:10); FasL PE (clone NOK-1, 1:5); and CD40L APC (clone 24–31, 1:5).
Anti-human MICA/B PE (BioLegend, clone 6D4, 0.1 µg) was used to stain breast cancer cell lines.
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2

Cytokine Profiling of T Cell Activation

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After stimulation with 20 ng/ml phorbol myristate acetate (PMA) (Sigma, USA) plus 1 µg/ml ionomycin (Sigma) for 1 hour at 37°C in 5% CO2, cells were cultured for 4 hours in the presence of 2 µM/L monensin (Sigma). Then, cells were stained with fluorochrome-conjugated antibodies to CD3-PerCP/cy5.5, CD56-FITC, CD8-FITC and CD4-FITC (Biolegend, San Diego, CA) at 4°C in the dark. Cells were then fixed and permeabilized, followed by intracellular staining for IFN-γ-PE, TNF-α-PE and isotype matched controls (Biolegend, San Diego, CA) at 4°C in the dark. Finally, cells were detected by flow cytometry.
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3

NK Cell Cytotoxicity Assay with scDbs

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A3.01 and ACH-2 cells (transformed CD4+ T cells, National Institutes of Health (NIH) AIDS Reagents Program, catalog nos. ARP-166 and ARP-349, respectively) were plated in BCM with 10 ng ml−1 of TNF and incubated at 37 °C for 18 h. The cells were washed in BCM to remove TNF. NK cells were isolated from uninfected participant PBMC and cocultured with either the reactivated A3.01 or ACH-2 cells at a 1:3 E:T ratio in BCM at 37 °C for 6 h in the presence of the scDbs or the parental IgG molecules (at the indicated concentrations), monensin (BD Bioscience) and CD107a-BV421 (BioLegend, catalog no. 328625). The supernatants were collected and analyzed by Human CD8/NK Panel Legendplex (BioLegend) per the manufacturer’s protocol. The cells were washed in PBS and stained with the following antibodies (1:50 dilution)/dye (1:1,000 dilution) at 4 °C for 45 min: CD3-BV605 and CD56-FITC (BioLegend; catalog nos. 317321 and 304603, respectively) and Fixable Viability Dye-eFluor780. The cells were washed, and samples were acquired on an Intellicyt iQue Screener Plus. Data were analyzed with FlowJo (see Supplementary Fig. 6 for gating example). NK cells are defined as live CD3CD56+ lymphocytes. All conditions were tested in triplicate, mean and s.d. shown.
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4

Intracellular Cytokine Profiling of T Cells and NK Cells

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To measure the levels of intracellular cytokines of CD4+ and CD8+ T cells as well as NK cells, PBMCs (1×106 cells/mL) were cultured for 4 hours with and without 2 μl Cell Stimulation Cocktail [containing PMA (40.5 μM), ionomycin (669.3 μM), and Brefeldin A (2.5 mg/ml)] (Biolegend, San Diego, USA). Following cell culture, PBMCs were washed with PBS and supernatants were discarded. Prior to the detection of intracellular cytokine levels, cell surface staining was performed using anti-CD3-BV785, -CD4-BV510, -CD8-PE/Cy5, -CD28-PE, -CD56-FITC and -CD57-BV711 mAbs (all from Biolegend, San Diego, USA). For intracellular staining, Fix&Cell Permeabilization Kit (Invitrogen, California, USA) was used according to the manufacturer’s protocol. Briefly, cells were fixed and then permeabilized together with addition of anti-IFN-γ-PE/Cy7, -TNF-α-APC/Cy7 and -IL-10-BV421 mAbs. Stained PBMCs were washed after the incubation and samples were analyzed on a NovoCyte flow cytometer running NovoExpress software (Agilent Technologies, USA).
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5

Comprehensive Immune Cell Profiling

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Antibodies used in hu-PBMC staining; CD3-FITC, CD19-eFluor®450, CD56-PerCP-Cy5, CD14-PE, CD11b-APC-Cy7, and CD11c –PE-Cy7 (eBioscience). Live cells were determined using the Live/Dead Aqua Fixable Dead Stain Kit (Invitrogen). Antibodies used for humanized mouse experiments: CD11c-FITC, CD56-FITC, CD14-PE, CD4-PE-Cy5, CD3-PE-Cy7, CD123-PE-Cy5, CD19-PB, CD11c-APC, CD56-APC, CD45-APC-Cy7 (Biolegend); CD8-PE-TR, CD4-PE-TR, mouse CD45-Pacific Orange (Invitrogen). FACS buffer; 1×PBS (Gibco) + 2% FBS (Sigma). All data were collected using an LSRII (BD Biosciences) or CyAn™ (Beckman Coulter) flow cytometer and analyzed using FlowJo (Tree Star, Inc.).
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6

Multicolor Flow Cytometry of PBMC

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We isolated peripheral blood mononuclear cells (PBMC) from peripheral blood by Ficoll gradient and we stored them in liquid nitrogen for batched analysis. For multicolor flow cytometry analyses, we used the following monoclonal antibodies: from Becton Dickinson (BD, Franklin Lakes, NJ), CD3-FITC, CD3-PerCP-Cy5.5, CD4-APC-Cy7, CD8-BV510, CD45RO-FITC, CD45RA-APC, CD45RA-APC-Cy7, CD71-PE, IgD-PerCP-Cy5.5, CD25-APC-Cy7, CD138-BV421, CCR4-PE, CD27-PE, CD95-BV421, CD28-BV421, TIM3-BV421, CCR6-BV421, CCR7-AF700, CXCR3-PE, IL-2-PE, IL-17-BV786, and IFN-γ-PE-Cy7; from Biolegend (San Diego, CA), CD19-BV510, CD56-FITC, CD27-APC, CD127-FITC, CD57-PerCp-Cy5.5, PD-1-APC-Cy7, CXCR5-FITC, LAG3-APC, IL-10-PerCP-Cy5.5, and TNF-α-FITC. From eBioscience (San Diego, CA), CD4-PE-Cy7, CD21-PE, and CD24-APC-Cy7 were used. From Miltenyi Biotec (Auburn, CA), CD25-APC and anti-KLRG1-PE were used. From Beckman Coulter (Indianapolis, IN), CD38-PE-Cy7 was used.
We performed intracellular staining for IL-2, IL-4, IL-17, IFN-g, and TNF-a together with extracellular markers for CD4+, CD8+, and CD19+. Cells were fixed and permeabilized using Intracellular Fixation and Permeabilization Buffer Set (eBioscience) according to the manufacturer’s instructions.
Data were acquired (> 1 × 106 events) on a 3-laser FACSLyric flow cytometer (BD Biosciences) and analyzed with FlowJo® software.
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7

Phenotypic Analysis of NK Cells

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The Monoclonal antibodies (mABs) used for phenotypic analysis included Fluorescein isothiocyanate (FITC)-, Phycoerythrin (PE)-, Phycoerythrin Cyanine 5.5 and allophycocyanin (APC)-labeled anti-CD45, anti-CD3, anti-CD56, NKp30, NKp44 (Beckman Coulter, Brea, CA, USA), anti-CD16, NKp46, NKG2A (R&D System), anti-CD94, anti-CD69, anti-CD18, anti-CD49, anti-CD62L, anti-CD38 and CXCR4 (BD Pharmingen, San Jose, CA, USA). Phenotype evaluation was performed by direct immunofluorescence according to previously reported methods [29 (link)]. NK cells recovered from immunodeficient NOD/SCID gamma (NSG) mice were stained with anti-mouse CD45-APC-Cy7, anti-human CD45-PE-Cy7, CD3-PerCP-Cy5.5, CD56-FITC (Biolegend, San Diego, CA, USA) and CD94-APC (BD).
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8

Evaluating NK Cell Response to Olaparib

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Peripheral blood mononuclear cells (PBMC) were isolated from the blood of healthy donors by density gradient centrifugation and resuspended in RPMI supplemented with 10% FBS and 1% penicillin–streptomycin (complete RPMI (cRPMI), Gibco). PBMC were seeded at a density of 500,000 cells per 500 µL of cRPMI and treated for 24 h with 5 μM or 10 μM of Olaparib. Following treatment, the cells were surface stained for flow cytometric analysis using CD56-FITC (BioLegend), CD3-APC-Cyanine7 (BioLegend), and the following antibodies for activating NKRs, NKp46-PE-Cyanine7 (BioLegend), DNAM-1-PE (BioLegend), NKp30-BV421 (BioLegend), NKG2D-PE-Cyanine5 (BioLegend), CD16-PE-Cyanine7 (BioLegend), inhibitory receptors NKG2A-APC (Miltenyi Biotec), PD-1-PE-Cyanine7 (BioLegend), and TIGIT-PerCP-Cyanine5.5 (BioLegend), death receptor ligands TRAIL-APC (BioLegend) and FasL-BV421 (BioLegend), and phenotypic markers, CD57-PE (BioLegend), CD69-BV510 (BioLegend), and CD27-Pacific blue (BioLegend). All samples were acquired using the BD FACS CANTO II (BD Biosciences) flow cytometer and analysed using FlowJo v10 software (BD Biosciences). NK cells were defined as CD56+ CD3 in the lymphocyte gate. The gating strategies are available in Supplementary Figure S1.
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9

Multiparametric Flow Cytometry Analysis

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Following collection of patient specimens, the following subsets were analyzed by FCM: whole BM, BMNCs, CD138+ cells, and CD138− cells. For each sample, at least 200,000 cells were washed and incubated for 30 min at 4°C with CD138-PeCy7, CD38-BV421, CD45-APC, CD19-PE, and CD56-FITC, or matching isotype controls (BioLegend), at a 1:200 dilution. Stained cells were washed once and fixed with 1% paraformaldehyde (PFA). For analysis of previously frozen primary CD138+ and CD138− cells, BMNCs, T cells, and B cells, Human TruStain FcX Fc Receptor Blocking Solution (BioLegend) was used according to the manufacturer’s directions. Cells were then stained with CD5-BV421, CD147-PE/Cy7, CD166-PE, CD205-APC (BioLegend), and CD98hc-FITC (ThermoFisher), or matching isotype controls (BioLegend). All samples were analyzed on a BD LSRFortessa X-20 flow cytometer (BD Biosciences). Data were analyzed using FlowJo software (FlowJo LLC).
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