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10 protocols using organic solvents

1

Solid Phase Peptide Synthesis Reagents

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All 9-fluorenylmethyloxycarbonyl (Fmoc) amino acid derivatives and solid phase peptide synthesis resins were purchased from Watanabe Chemical Industries Ltd. (Hiroshima, Japan). All other reagents including organic solvents were purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan).
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2

Afidopyropen Insecticide Production

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Afidopyropen was produced and purified in accordance with our established methods31 . The commercial insecticides imidacloprid and flonicamid were purchased from FUJIFILM Wako Pure Chemical Corporation (Tokyo, Japan). Organic solvents, chemical reagents and all the consumables were purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan).
The authors confirm that we used plants commercially available in Japan in this research and all studies involving plants and plant materials were done in compliance with local and national regulations/guidelines.
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3

Twelve-KETE Quantification in Placenta Cells

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Twelve-KETE in the culture medium was measured by HPLC (LC-10; Shimadzu, Japan). The culture medium was collected 90 min after the addition of Ara (FUJIFILM Wako Pure Chemical Co., Japan) at a final concentration of 75 μM to the placenta-derived fibroblast culture. The pH of the medium sample (5 mL) was adjusted to 3. The sample was loaded onto a Sep-Pack C18 cartridge column (Waters, USA), and extracted with 5-mL ethyl acetate/methanol (9:1). After drying with nitrogen gas, the residue was resuspended in methanol. Reverse-Phase HPLC was performed on a Symmetry C18 column (4.6×250 mm, 5 μm) (Waters, USA) in methanol/water/acetic acid (85:15:0.01) at a flow rate of 0.5 mL/min. Absorbance was measured at 280 nm. Organic solvents were purchased from FUJIFILM Wako Pure Chemical Corporation (Japan).
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4

Selective Inhibitor compA Synthesis

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Structure of compA was shown in Fig 1A. Synthesis of compA was reported previously [20 (link)]. This compound exhibited selectivity (greater than 30,000-fold) against related acyltransferases (MGAT3, DGAT1, DGAT2, and ACAT1) [20 (link)]. Glycerol-labeled MG (2-oleyl-[1, 1, 2, 3, 3 d5]-glycerol) and fatty acid-labeled MG (2-[17, 17, 18, 18, 18 d5]-oleoylglycerol) were purchased from CURACHEM (Gyeonggi-do, Korea). Organic solvents were purchased from WAKO (Osaka, Japan).
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5

Purification and Characterization of Organic Compounds

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Organic solvents and Silica gel (75–120 mesh) for open column chromatography (CC) were purchased from Wako Pure Chemical Industries (Osaka, Japan). Analytical NP-TLC (silica gel 60 GF254 plates, 20 × 20 cm × 0.2 mm thick) and RP-TLC (RP-C18 F254 plates, 5 × 7.5 cm × 0.2 mm thick), both obtained from Merck (Darmstadt, Germany). TLC plates were envisioned under UV light (SLUV-6, AS One, Osaka, Japan) at 254 and 365 nm and then heated at 105 °C for 5 min after being sprayed with 5% sulfuric acid in methanol. Preparative RP-TLC Silica gel 60 RP-18 F254S glass plates were obtained from Merck (Darmstadt, Germany) and Preparative NP-TLC Silica gel 70 FM TLC glass plates (Wako Industrial Company, Shimizu, Japan) were used for final purification of the compounds. One-dimensional and two-dimensional NMR experiments were carried out on a Bruker DRX 600 NMR spectrometer (Bruker Daltonics Inc., Billerica, MA, USA), using TMS as an internal standard at 600.00 MHz for 1H-NMR and 150.9 MHz for 13C-NMR. Chemical shifts (δ) were expressed in ppm, while the coupling constant (J) in Hz.
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6

Purification and Animal Procedures

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All commercially available reagents were used without further purification. Distilled water was purchased from Nacalai Tesque. All organic solvents were purchased from Wako Pure Chemicals Industries. All animal procedures were performed in accordance with the Guidelines for Care and Use of Laboratory Animals of RIKEN and approved by the Animal Ethics Committee of RIKEN (H29-2-103).
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7

Enzyme Inhibition Assay Protocol

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PTP1B was purchased from Enzo Life Sciences (Farmingdale, NY, USA). p-Nitrophenyl phosphate was purchased from Sigma-Aldrich (St Louis, MO, USA). Oleanolic acid was purchased from Tokyo Chemical Industry (Tokyo, Japan). Potato dextrose agar was purchased from BD (Franklin Lakes, NJ, USA). Plastic plates (96-well) were purchased from Corning (Corning, NY, USA). All other chemicals including organic solvents were purchased from Wako Pure Chemical Industries (Osaka, Japan).
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8

Cultivation of Mycobacterial Strains

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Potato dextrose agar, Middlebook 7H9 broth, polysorbate 80 and Middlebook OADC were purchased from BD (Franklin Lakes, NJ, USA). All other chemicals including organic solvents were purchased from Wako Pure Chemical Industries (Osaka, Japan).
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9

Microbial Secondary Metabolite Screening

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Organic solvents, chemical reagents and all consumables were purchased from Wako Pure Chemical Industries, Ltd, Tokyo, Japan. The insecticidal screening of each agricultural pest described below was conducted using the Meiji library of microbial secondary metabolites.
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10

Characterization Methods for Bioactive Compounds

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General Experimental Procedures EI-MS and FAB-MS were measured on a JMS-MS 700 mass spectrometer (JEOL, Tokyo, Japan). 1 (link) H-and 13 C-NMR spectra were recorded on a JNM-AL-400 NMR spectrometer (JEOL) at 400 MHz for 1 H and 100 MHz for 13 (link) C in CDCl 3 (δ H 7.24, δ C 77.0). Specific rotations were obtained with the digital polarimeter P-2300 (JASCO, Tokyo, Japan). UV spectra were measured on the UV-visible (Vis) spectrophotometer U-3310 (Hitachi High Technologies Co., Ltd., Tokyo, Japan). ECD spectra were measured with a JASCO J-720 spectropolarimeter. IR spectra were recorded on the Fourier transform infrared spectrometer FT-710 (Horiba Ltd., Kyoto, Japan). Preparative HPLC was performed using an L-6200 HPLC system (Hitachi High Technologies Co., Ltd.).
Materials PTP1B was purchased from Enzo Life Sciences (Farmingdale, NY, U.S.A.). p-Nitrophenyl phosphate (pNPP) was purchased from Sigma-Aldrich (St. Louis, MO, U.S.A.). Oleanolic acid was purchased from Tokyo Chemical Industry (Tokyo, Japan). Plastic plates (96-well) were purchased from Corning Inc. (Corning, NY, U.S.A.). All other chemicals including organic solvents were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan).
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