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6 protocols using apc conjugated anti cd44

1

Multimodal Cancer Treatment Investigation

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The 5-fluorouracil, metformin, and ICG-001 used were purchased from Sigma-Aldrich (St. Louis, MO, USA) and Selleckchem (Houston, TX, USA) respectively. The antibodies, such as anti-PARP, anti-cleaved PARP, anti-caspase 3, anti-cleaved caspase 3, anti-LC3B, anti-ATG9A, anti-CD44, anti-β-catenin, anti-OCT4, anti-β-actin, anti-p-AMPK, and anti-AMPK were procured from Cell Signaling Technology (Danvers, MA, USA). APC conjugated anti-CD44 was procured from BioLegend (San Diego, CA, USA). All the primers were procured from Integrated DNA Technologies (San Diego, CA, USA).
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2

Phenotyping of Cancer Stem Cells

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Cells were stained with the following antibodies from Biolegend (San Diego, CA): allophycocyanin (APC)-conjugated anti-CD44 (RRID:AB_312963), phycoerythrin (PE)-conjugated anti-CD24 (RRID:AB_314854) and APC-conjugated anti-EpCAM (RRID:AB_756081). FACS analysis of stained cells was performed using a FACSAria II cell sorter (Becton Dickinson, Franklin Lakes, NJ) as previously described (Lo et al., 2016 (link)).
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3

Profiling 4T1 Cell Stemness under Fibroblast Influence

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For determining the influences of fibroblasts on 4T1 cell stemness, 4T1 cells and shNC or shSpry2 fibroblasts were co-cultured in Matrigel. After 7 days, the picture of colonies was captured and cells were dissociated and suspended in PBS supplemented with 0.5% BSA for staining with APC-conjugated anti-CD44 (#103011, BioLegend) and PE anti-mouse CD24 Antibody (#138503, BioLegend) antibodies for 15 min at 4 °C. The stained cells were analyzed by flow cytometry (FACSAria™ III, Becton Dickinson) and FlowJo v.10.4.2 was used for further analysis.
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4

Mouse Kidney Cell Isolation and Immunophenotyping

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Mouse kidney tissue was diced and digested with Collagenase-I at 37°C for 1 hour. The suspension was filtered through a 40 um strainer to remove cell pellets and washed in PBS to generate a single cell suspension after lysis of red blood cells (BD, USA). The cells were washed twice with PBS. The third generation of hAD-MSCs were trypsinized and washed twice with PBS. The cells were then incubated with the following fluorescent antibodies and corresponding isotype controls (Cat.Number: 400605, 400611 and 400507, Biolegend, USA) for 30 minutes shielded from light at room temperature: FITC-conjugated anti-CD45, APC-conjugated anti-CD11b, PE-Cy7-conjugated anti-CD3, PE-conjugated anti-F4/80, APC-conjugated anti-CD34, PE-conjugated anti-CD31, FITC-conjugated anti-CD90, APC-conjugated anti-CD44 and PE-conjugated anti-105 (Biolegend, USA). The positive cells were sorted using a BD FACS and the data were analysed using the FlowJo v7.6.3 software.
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5

Multiparametric Flow Cytometry Analysis

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APC‐conjugated anti‐CD44 (#103011, 1:200; Biolegend, San Diego, CA, USA), phycoerythrin (PE)‐conjugated anti‐glial fibrillary acidic protein (GFAP; #FCMAB257P, 1:40; Millipore, Burlington, MA, USA), PE‐conjugated anti‐microtubule‐associated protein 2 (MAP2; #FCMAB318PE, 20 μl per test; Millipore), and control IgG (#555749, 1:40; BD Biosciences) antibodies were used for FACS. To obtain CD44High or CD44Low cells, patient‐derived primary tumor cells or transplanted murine primary tumor cells stained with 1:200 dilutions of APC‐conjugated anti‐CD44 antibody were subjected to FACS. For cell cycle analyses, cells were incubated with 20 μm BrdU (#B5002; Sigma‐Aldrich, St Louis, MO, USA) for 3 days, followed by incubation with PE‐conjugated anti‐BrdU antibody (#339811, 1:40; Biolegend). Apoptotic cell death was measured using an APC‐ (#ab236215; Abcam, Cambridge, UK) or FITC‐conjugated (#ab14085; Abcam) Annexin V Apoptosis Detection Kit I.
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6

Cell Surface Marker Analysis

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For cell surface marker analysis, cells were suspended in FACS buffer (PBS with 0.1% BSA and 0.1% Tirton X100) followed by incubation with FITC conjugated anti-CD24 (eBioscience, Inc.), APC conjugated anti-CD44 (BioLegend), PE conjugated anti-ESA (eBioscience, Inc.) for 15mins at room temperature. Cells were then washed with PBS and re-suspended in PBS for FACS analysis using the C6 Flow cytometer (Accuri LTD).
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