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15 protocols using 96 well culture dishes

1

MTT Assay for Cell Viability

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Cell viability was measured using a 3-[4,5-dimethylthiazol-2-thiazolyl]-2,5-diphenyl-tetrazolium bromide (MTT) assay that is based on mitochondrial conversion of MTT from a soluble tetrazolium salt into an insoluble colored formazan precipitate, which was dissolved in DMSO and quantified by spectrophotometry (Thermo Multiskan MK3; Thermo Labsystems, Shanghai, China) to obtain optical density (OD) values. OS cells were plated in 96-well culture dishes (Costar, Cambridge, MA, USA) at a density of 1000–2000 cells/well in 100 μL of medium. Serial dilutions were generated from a stock solution of MLN4924 to the desired concentrations. All experimental concentrations were replicated in triplicate. Four hours before the desired time points, 10 μL of 10 mg/mL MTT was added. After a 4h incubation, all media was removed from wells, and 100 μL of DMSO was added. Absorbance percentages for treated cells relative to those of untreated control samples were plotted as a function of drug concentration (log scale). Inhibition of cell viability was measured by the percentage of viable cells relative to the control: % inhibition = 100% × ODT / ODC, where ODT is the average OD value of the treated samples and ODC is the average OD value of the control samples.
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2

Cell Proliferation Assay of Drugs on Breast and Bone Cells

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MCF-7 and MC3T3-E1 cells were suspended in DMEM and α-MEM culture media and plated at a density of 5.0×103 cells/well in 96-well culture dishes (Costar, Cambridge, MA, USA). Following 24 h of culture, the medium was replaced with complete culture medium supplemented with various concentrations of drugs. To assess the effects of mSGLXD and RD alone on MCF-7 cell proliferation, MCF-7 cells were treated with mSGLXD (1.25–50 mg/ml) or RD (1.25–50 mg/ml). To assess the effects of mSGLXD and anastrozole alone or in combination on MC3T3-E1 cell proliferation, MC3T3-E1 cells were treated with mSGLXD (0.625–10 mg/ml), anastrozole (0.01–100 μmol/l) or mSGLXD (0.625–10 mg/ml) as well as 10 or 100 μmol/l anastrozole. Following 48 h of drug treatment, the cells were incubated with cell counting kit-8 solution (CCK-8; Dojindo Molecular Technologies, Inc., Kumamoto, Japan) for 2 h. Subsequently, the absorbance (optical density, OD) at 450 nm was measured using a microplate reader (Model 680; Bio-Rad Laboratories, Hercules, CA, USA) and cell viability was calculated according to the following formula: (ODsample−ODblank)/(ODcontrol−ODblank)×100%.
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3

Cell Viability Assay with CCK-8

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Cell viability was measured using a Cell Counting Kit-8 (Sigma-Aldrich Shanghai, Shanghai, China) to obtain optical density (OD) values. OS cells were plated in 96-well culture dishes (Costar, Cambridge, MA, USA) at a density of 3000–4000 cells/well in 100 μL of medium. Serial dilutions were generated from a stock solution of compounds to the desired concentrations. All experimental concentrations were replicated in triplicate. Before the desired time points, 10 μL CCK-8 was added. After 2–4 h incubation, the absorbance was measured at 450 nm using a microplate reader. Absorbance percentages for treated cells relative to those of untreated control samples were plotted as a function of drug concentration. Inhibition of cell viability was measured by the percentage of viable cells relative to the control: % inhibition = 100% × ODT/ODC, where ODT is the average OD value of the treated samples and ODC is the average OD value of the control samples.
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4

Paraquat-Induced Oxidative Stress Assay

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For measurement of cell viability, stably transfected cells were sub-cultured at a density of 104 cells/well onto 96-well culture dishes (Corning Costar). After 24 h medium was added containing doxycycline. After another 48 h one part of the cells was exposed to oxidative stress with 0.2 mM paraquat. Cell viability was measured in triplicate in paraquat treated and untreated cells using CellTiter-Blue Cell Viability Assay (Promega) according to the manufacturer’s protocol in a final volume of 120 μl. Fluorescence emission at 590 nm of resorufin was measured after 4 h using the Infinite 200 PRO Microplate Reader and the Magellan Data Analysis Software v6.6 (Tecan Group AG, Männedorf, Switzerland). Experiments were repeated at least six times.
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5

MTT Assay for Cell Viability

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A549 or H1975 cells were suspended in complete RPMI-1640 medium and plated at a density of 5 × 103 cells/well in 96-well culture dishes (Costar, Cambridge, MA, USA). Following 24 h of culture, the medium was replaced with complete culture medium supplemented with various concentrations of drugs. On the collection time points, cells were incubated with MTT at 37 °C for 4 h, and the precipitate was dissolved in DMSO. Subsequently, the absorbance (optical density, OD) at 570 nm was measured using a microplate reader (Model 680; Bio-Rad Laboratories, Hercules, CA, USA) and cell viability was calculated according to the following formula: (ODsample − ODblank)/(ODcontrol − ODblank) × 100%.
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6

MTT Assay for Cell Viability

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Cell viability was measured using a 3-[4,5-dimethylthiazol-2-thiazolyl]-2,5-diphenyl-tetrazolium bromide (MTT) assay that is based on mitochondrial conversion of MTT from a soluble tetrazolium salt into an insoluble colored formazan precipitate, which was dissolved in DMSO and quantified by spectrophotometry (Thermo Multiskan MK3; Thermo Labsystems, Shanghai, China) to obtain optical density (OD) values. HCC cells were plated in 96-well culture dishes (Costar, Cambridge, MA, USA) at a density of 1000-2000 cells/well in 100 μL of medium. Serial dilutions were generated from a stock solution of JQ1 to the desired concentrations. All experimental concentrations were replicated in triplicate. Four hours before the desired time points, 10 μL of 10 mg/mL MTT was added. After a 4-h incubation, all media from wells were removed, and 100 μL of DMSO was added. The percentages of absorbance relative to those of untreated control samples were plotted as a function of drug concentration (log scale). Inhibition of cell viability was measured by percentage of viable cells relative to the control: % inhibition = 100% × ODT / ODC, where ODT is the average OD value of the treated samples and ODC is the average OD value of the control samples.
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7

Detecting H2O2 release in cells

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To detect H2O2 released from and within cells, stably transfected cells were sub-cultured at a density of 104 cells/well onto 96-well culture dishes (Corning Costar). After 24 h medium was added containing doxycycline. After another 48 h the cells were exposed to oxidative stress with 0.2 mM paraquat. The concentration of H2O2 was measured in triplicate in paraquat treated and untreated cells using Amplex Red Hydrogen Peroxide Assay (Invitrogen) according to the manufacturer’s protocol in a final volume of 100 μl. Amplex Red reagent reacts with H2O2 and produces the red-fluorescent oxidation product resorufin. Fluorescence emission at 590 nm of resorufin was measured after 5 h using the Infinite 200 PRO Microplate Reader and the Magellan Data Analysis Software v6.6 (Tecan Group AG, Männedorf, Switzerland). Experiments were repeated at least four times.
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8

Sorafenib Cytotoxicity Evaluation via MTT

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Cells were seeded into 96-well plates (2,000 cells/well, 5 wells/group) and cultured for at least 96 h to determine the proliferation curves. The cells were photographed every 6 h in the long-term dynamic observation platform (IncuCyte, Essen, MI, United States). The cell confluence was analyzed using IncuCyte ZOOM software (Essen, Ann Arbor, MI, United States). The cytotoxicity of sorafenib was determined by cytotoxic MTT assay. Cells were suspended in complete RPMI-1640 medium and plated at a density of 5 × 103 cells/well in 96-well culture dishes (Costar, Cambridge, MA, United States). Different concentrations of sorafenib were added into each plate with 0.5% (v/v) final concentration of DMSO in all wells and incubated for an additional 72 h. For collection time points, cells were incubated with MTT at 37°C for 4 h, and the precipitate was dissolved in DMSO. Subsequently, the absorbance (optical density, OD) at 570 nm was measured using a microplate reader (Model 680; Bio-Rad Laboratories, Hercules, CA, United States). At least three independent experiments were performed to obtain the IC50 values, calculated using the fitted concentration–response curve of each drug regimen.
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9

Cytotoxicity Evaluation of Thymoquinone in Renal Cancer Cells

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786‐O and ACHN cells were plated into 96‐well culture dishes (Corning, NY, USA) at a density of 5 × 103 cells/well with complete culture medium. After being incubated overnight, the medium was removed and replaced with fresh medium containing different concentrations of TQ (0, 10, 20, 40, 60, 80 and 100 μmol/L) for 24 or 48 hours, respectively. Then the medium was removed and 20 μL CCK8 was added into each well and incubated for 4 hours at 37°C. The optical density (OD) of each well was measured at 490 nm by microplate reader.
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10

SH-SY5Y Cell Viability Assay

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The viability of SH-SY5Y cells was determined using the Cell Counting Kit-8 (CCK8, Dojindo, Japan) assay. Cells were plated at a density of 8000 cells/cm2 in 96-well culture dishes (Corning) and incubated with different concentrations of MPP+ (0, 0.2, 0.4, 0.6, 0.8, 1, 2 mM) for 48 h. Subsequently, 10 ml of a solution of CCK8 in culture medium was added to each well, and the incubation continued for an additional 1 h. Finally, cell viability was quantified by measuring the absorbance value at 450 nm, and the results were expressed as percentages of the control.
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