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15 protocols using ln229

1

Glioma Cell Line Experiments

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Human normal astrocytes were purchased from Jennio Biological Technology (Guangzhou, China). Human glioma cell lines U87, LN229, U251 and T98G were purchased from Procell (Wuhan, China). All the cell lines were cultured in Dulbecco’s modified Eagle’s medium containing 10% fetal bovine serum (FBS, Gibco, USA). The cell lines were maintained in a humidified incubator (37°C and 5% CO2). Small interfering RNA (siRNA), miR-545-3p mimic, miR-545-3p inhibitor, overexpression plasmid (full-length sequence of circ_0001367 was cloned into pGL3-Basic Vector) and the corresponding negative controls used in this study were all synthesized by GenePharma (Shanghai, China). Once the cells reached approximately 80% confluence, they were transfected with synthesized oligonucleotides using Lipofectamine 3000 (Invitrogen, USA) according to the manufacturer’s protocol.
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2

Culturing Glioma Cell Lines

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Glioma cell lines (U87, U118, T98G, A172 and LN229) were obtained from Procell (Wuhan, China). The normal human astrocytes (NHAs) obtained from JENNIO Biological Technology (Guangzhou, China). All six cell lines were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Gibco, NY, USA, Cat. No. 11965092) containing 10% foetal bovine serum (FBS, ScienCell, LA, USA, Cat. No. 0500) and were incubated in an atmosphere containing 5% CO2 at 37°C.
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3

Culturing Human Glioma Cell Lines

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The human glioma U87, LN229 and U251 cell lines were purchased from Procell Life Science &Technology Co., Ltd. and immortalized normal human astrocytes (NHAs) were purchased from Shanghai BinsuiBio Co., Ltd. The U87 cell line is not the original glioblastoma cell line established in 1968 at the University of Uppsala; it is the U87 MG ATCC version (CVCL_UE09), which is most probably a glioblastoma, but whose origin is unknown. The cells were cultured in DMEM (Gibco; Thermo Fisher Scientific, Inc.) with 10% fetal calf serum (Gibco; Thermo Fisher Scientific, Inc.) and 1% penicillin-streptomycin (Gibco; Thermo Fisher Scientific, Inc.) at 37°C with 5% CO2.
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4

Investigating circRFX3 and RFX3 Regulation

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Four IDH-wild type (WT) glioma cell lines (A172, U251, SHG44 and LN229) were bought from Procell (Wuhan, China) and human normal astrocyte cell line (NHA) was bought from Mingzhoubio (Ningbo, China). All cells were cultivated at 37 °C in Dulbecco’s modified Eagle’s medium (DMEM; Procell) mixed with 10% fetal bovine serum (FBS; Procell) and 1% penicillin–streptomycin solution (Procell) in a humid incubator including 5% CO2.
To block transcription, A172 and U251 cells were exposed to Actinomycin D (2 μg/mL; Sigma-Aldrich, St. Louis, MO, USA) for 8 h, 16 h and 24 h. Afterward, the levels of circRFX3 and RFX3 mRNA were examined using the quantitative real-time polymerase chain reaction (qRT-PCR) analysis mentioned next.
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5

Glioma Cell Line Culture Protocol

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The glioma cell lines (U118, U138, LN229, and HS683) and their culture medium (Dulbecco’s modified Eagle medium) were obtained from Procell Life Science & Technology Co., Ltd. (Wuhan, China). HA and its culture medium (Astrocyte Medium) were purchased from ScienCell Research Laboratories, Inc. (San Diego, CA, USA). All the cells were cultured in a sterile cell incubator at 37 °C with 5% CO2.
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6

Glioblastoma Cell Line Characterization

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Human glioblastoma cell lines LN-229, U-251, SHG-44, and U87 were purchased from Procell BioTech. All cell lines were authenticated by short tandem repeat (STR) profiling by the suppliers. The cell lines were cultured separately from one another to prevent cross-contamination. Human brain astrocytes were purchased from ScienCell Biotech Co., Ltd. Cells were cultured and passaged in Dulbecco's modified Eagle's medium-F12 (DMEM/F12) containing 10% fetal calf serum (FCS). The cell culture reagents were purchased from Sigma-Aldrich.
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7

Cell Culture Protocol for Glioma and THP-1 Cells

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Normal human astrocytes (NHAs), U251, A172, T98G, LN229, U118 and THP‐1 cells lines were purchased from Procell. NHAs and glioma cell lines were cultured in Dulbecco's modified Eagle medium (DMEM) supplemented with 10% fetal bovine serum (FBS, Sciencell). The THP‐1 cells were cultured in RPMI 1640 medium with 10% heat‐inactivity FBS. Besides, 0.1 μg/ml phorbol‐12‐myristate‐13‐acetate (PMA, Sigma Aldrich) was used to induce differentiation of THP‐1 cells into macrophages. All cells were placed in an incubator with an atmosphere of 5% CO2 at 37°C.
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8

Astrocyte and Glioma Cell Lines Culture

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We obtained normal human astrocytes together with human glioma cell lines (U118, A172, T98G, LN229 and U251) from Procell (Wuhan, China). All cells were cultured in Dulbecco’s modified Eagle medium (DMEM, Cat.C11995500BT, Gibco, USA) supplemented with 10% fetal bovine serum (FBS, Cat.0500, Sciencell, USA) in a 5% CO2 incubator at 37°C. The cells were passaged once the 80% confluent.
The vectors and related compounds used for transfection were from GenePharma (Shanghai, China). The cells were placed into a six-well plate and allowed to grow until they reached 90% confluent, and transfected with lentiviruses expressing shRNAs, overexpression plasmids or corresponding negative controls according to the instructions provided by the manufacturer.
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9

Knockdown of CKAP2L in Glioma Cells

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Normal human astrocytes and glioma cell lines LN229, T98, U251, and A172 were purchased from Procell Life Science & Technology Co, Ltd. (Hyderabad, India). All cells were incubated in Dulbecco's modified Eagle's medium (Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (Hyclone, Logan, UT, USA) at 37°C under 5% CO2 in a humidified incubator. Expression of CKAP2L was measured in all five cell lines, as described below, and the cell line with the highest CKAP2L expression was selected for further experiments. Accordingly, U251 cells were transfected with lentiviruses containing control shRNA or shRNA against CKAP2L (5′-GATCCGCAAACAAAGAGAACTTGCTCGATATTTCAAGAGAATATCGAGCAAGTTCTCTTTGTTTGTTTTTTGGAAG-3′), which were purchased from GenePharma (Suzhou, China), and screened using puromycin.
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10

Establishment of Glioma and Macrophage Cell Lines

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Human glioma cell lines U87, T98G, LN229, U373, human astrocyte cell line HA1800, and human mononuclear macrophage line (THP-1) were purchased from Procell Life Science & Technology (Wuhan, China). U251 was purchased from the Shanghai Cell Bank of the Chinese Academy of Sciences (Shanghai, China). Murine glioma cell line GL261 was obtained from American Type Culture Collection (Manassas, VA, USA). All cell lines were tested without mycoplasma contamination. The human and murine glioma cells were cultured in Dulbecco’s Modified Medium (DMEM) with 10% fetal bovine serum (FBS). THP-1 was maintained in RPMI-1640 medium with 10% FBS. All the cell culture media were supplemented with 1% penicillin/streptomycin (10378016, Gibco) to prevent bacterial contamination.THP-1 monocytes were conditioned with 5 nM PMA (P1585, Sigma) for 48 h to differentiate as THP1-derived macrophages. All cells were cultured at 37 °C in a humidified incubator with 5% CO2.
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