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10 protocols using ets 1

1

Protein Extraction and Western Blotting Protocol

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Proteins were extracted using RIPA Lysis buffer (Thermo, USA) with protease inhibitor (Roche, USA). Protein concentration was measured using the BCA kit (Beyotime, China). Then protein was separated by SDS-PAGE and transferred onto PVDF (Millipore, Germany). The membranes were incubated with primary antibodies such as rabbit anti-GAPDH (Abcam; USA), anti-MMP9 (Abcam; USA) and Ets1 (Abcam; USA). The membrane was then incubated with HRP-conjugated secondary antibodies. Finally, proteins were visualized by enhanced chemiluminescence (Amersham, UK).
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2

Immunohistochemical Analysis of Aorta Tissues

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The aorta tissues of rats were collected and embedded in paraffin and then processed for immunohistochemical analysis. The paraffin sections were incubated with antibodies against VCAM-1 (Abcam), p-p65 (Abcam), PTP1B (Abcam) or ets1 (Abcam) overnight at 4°C. Then, an EnVisionTM Detection Kit (Glostrup, Denmark) was employed to probe signals using diaminobenzidine (DAB) as the enzyme substrate according to the manufacturer’s instructions.
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3

ChIP Assay of VEGFR1 Promoter

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A ChIP assay Kit (Millipore) was used as previously described 32 (link). HUVECs were exposed to 1% paraformaldehyde for 10 min to achieve in vivo crosslinking, then the crosslinked DNA were sheared to 200-1000 bp fragments by sonication. The chromatin fragments were immunoprecipitated with antibodies against ETS-1 (Abcam) and IgG (Millipore) using protein A/G agrose beads. The immunoprecipitated gDNA was enriched by centrifuging and purified by Phenolic chloroform isoamyl alcohol (25:24:1). The immunoprecipitated fragments of the VEGFR1 promoter were amplified by PCR. The primers are as follows: forward, 5ˊ-CCCTCGGCTGCTCTTCATC-3ˊ; reverse, 5ˊ-TTCCTCCCAGGCTCGCTTCC-3ˊ.
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4

Immunoblot Analysis of Cell Signaling Proteins

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Immunoblot analysis was performed as described24 (link). SuperSep Ace gels (5–20%) were from Wako. Antibodies were against ETS1 (Abcam, Cambridge, UK), HSC70 (B-6, Santa Cruz Biotechnology), CXCR4 (ab124824, ab2074; Abcam), and ANGPTL2 (R&D Systems). Immunodetection was performed using an enhanced chemiluminescence (ECL) kit (GE Healthcare, Amersham, UK).
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5

Protein Expression Analysis by Western Blot

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Cell lysates were prepared and subjected to 12% polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes (Bio‐Rad, Hercules, CA, USA) for Ets‐1 (Abcam), FAK, Src, AKT, mTOR (Santa Cruz Biotechnology, Santa Cruz, CA, USA) and β‐actin (Maxim, Fuzhou, China) detection. An enhanced chemiluminescence substrate kit (Beyotime Biotechnology, Haimen, China) was used for the chemiluminescent detection of signals with autoradiography film.
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6

Western Blot Analysis of EMT Markers

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Cells were harvested and lysed in RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) containing protease inhibitors for 20 min at 4°C. Equal amounts of the proteins were separated by 10% SDS‐PAGE and transferred to PVDF membranes (Millipore, Billerica, MA, USA). After blocking with 5% nonfat milk, the membranes were incubated with primary antibodies against β‐actin (Beyotime Biotechnology), Pol ι (Proteintech, Rosemont, IL, USA), ETS‐1, p‐ETS‐1, E‐cadherin, Erk1/2, p‐Erk1/2 (Abcam, Cambridge, MA, USA) and N‐cadherin (Multi Sciences, Hangzhou, China). The membranes were then incubated with an HRP‐conjugated anti‐mouse or anti‐rabbit secondary antibody (Beyotime Biotechnology). The protein bands were visualized using High‐sig ECL Western Blotting Substrate (Tanon, Shanghai, China). Images were collected using the Tanon‐5200 Chemiluminescent Imaging System (Tanon). Endogenous β‐actin protein expression was detected as the internal control for each sample.
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7

Cardiac Cell Culture and Analysis

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Dulbecco's modified Eagle's medium (DMEM/F12), foetal bovine serum (FBS) and collagenase II were obtained from HyClone. Trypsin was provided by Beyotime. All other cell culture reagents were purchased from Sigma Chemicals unless otherwise specified. Primary antibodies against KDM3A, ETS‐1, Bax, Bcl‐2, IL‐6, TNF‐α, GAPDH, ANP and BNP were purchased from Abcam. The secondary antibodies, either HRP‐linked goat anti‐mouse IgG or goat anti‐rabbit IgG, were also obtained from Abcam. The miR‐22‐3p mimic and its scrambled oligonucleotides (miRNA‐NC) were synthesized by GenePharma Co., Ltd.
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8

Gene expression analysis by qPCR and Western blot

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Total RNA was extracted from tissue samples and cultured cells using the Trizol reagent (Takara), and qPCR was performed using the PrimeScript RT reagent kit (Takara) and SYBR Premix Ex Taq (Takara, USA) according to the manufacturer’s instructions. GAPDH was used as an internal control to detect the mRNA expression. For the detection of miRNA, Mir-XTM miRNA First-Strand Synthesis Kit (Takara, USA) was used for synthesizing cDNA from different types of miRNAs and U6 small nuclear RNA was used as an internal control. Data analysis was performed using the 2–ΔΔCt method. Primers are listed in Supplementary Table 1.
Standard western blot procedure was performed and the protein bands were transferred onto a nitrocellulose membrane (Bio-Rad, USA). Non-fat milk (5%) was used for blocking and the membranes were incubated with primary antibodies against GAPDH (Proteintech, 1:1000), β-catenin (CST, 1:1000); TGM2 (CST, 1:1000); ETS1 (Abcam, 1:1000) overnight. After incubation with an appropriate secondary antibody, the protein bands were visualized using Immobilon ECL (Millipore).
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9

Western Blot Analysis of Cellular Responses

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Cells were treated with or without 25, 50, or 100 μg/mL of O-PMs and harvested with RIPA buffer (H.M. Biological, Taoyuan, Taiwan) supplemented with protease and phosphatase inhibitors (Thermo Fisher Scientific, MA, USA). In addition, cytoplasmic and nuclear proteins were extracted using a Nuclear Extraction Kit (Cayman Chemical, MI, USA). Thirty micrograms of protein were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The membranes were incubated overnight at 4 °C with primary antibodies against fibronectin, ETS-1 (1: 2000 dilution, Abcam, Cambridge, UK), E-cadherin, phosphorylated-NF-κB p65 (1:2000 dilution, Cell Signaling Technology, MA, USA), Lamin A + C, α-tubulin, β-actin (1:2000 dilution, GeneTex, CA, USA), or vimentin (1:2000 dilution, Santa Cruz Biotechnology, TX, USA). The anti-GAPDH antibody (1:10000 dilution, Tools, New Taipei City, Taiwan) was used as the loading control. Images were visualized by UVP BioSpectrum 815 imaging system (UVP, CA, USA), and the intensity of each band was quantified using ImageJ software.
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10

Protein Expression Analysis by Western Blot

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Total proteins (20 mg) were electrophoresed and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, MA, USA). The membranes were individually incubated with antibodies for Ets-1 (Abcam, Cambridge, MA, USA), MMP1 (Abcam), MMP3 (CST, Danvers, MA, USA), MMP9 (Santa Cruz Biotechnology, Santa Cruz, CA, USA). The blots were developed using a horseradish peroxidase-conjugated secondary antibody, and the immunoreactive proteins were visualized with an chemiluminescence (ECL) system (Advansta, Menlo Park, CA, USA), as described previously 20 .
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