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7 protocols using anti rabbit hq

1

Automated Immunohistochemistry Staining for Abi1

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Immunohistochemistry was performed on TMA sections with the automated immunohistochemistry staining platform DISCOVERY ULTRA (Ventana Medical Systems, Inc.). Antigen retrieval was conducted with Cell Conditioning 1 (CC1) (Ventana) at 95 °C for 64 min. Slides were incubated with a 1:200 dilution of Abi1 antibody (Cell Signaling Technologies, 39444S) at room temperature for 2 h. For detection, a DISCOVERY ChromoMap DAB Kit, anti-HQ HRP, and anti-rabbit HQ (Ventana) were used. Digital images of stained TMAs were acquired with an SCN400 Slide Scanner (Leica Microsystems). Positively stained cells were analyzed with Aperio ImageScope (Leica Biosystems).
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2

Immunohistochemical Profiling of FFPE Tumor Samples

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Immunohistochemistry of the FFPE tumor samples was performed on a BenchMark Ultra autostainer (TLE3) or Discovery Ultra autostainer (Glucocorticoid Receptor). Briefly, paraffin sections were cut at 3 µm, heated at 75°C for 28 min and deparaffinized in the instrument with EZ prep solution (Ventana Medical Systems). Heat-induced antigen retrieval was carried out using Cell Conditioning 1 (CC1, Ventana Medical Systems) for 64 min at 95°C.Glucocorticoid Receptor clone D6H2L (Cell Signaling) was detected using 1/600 dilution, 1 hr at 370C and TLE3 using clone CL3573 (1/250 dilution, 1 hr at RT). Bound TLE3 was detected using the OptiView DAB Detection Kit (Ventana Medical Systems). Glucocorticoid Receptor bound antibody was visualized using Anti-Rabbit HQ (Ventana Medical systems) for 12 min at 370C, Anti-HQ HRP (Ventana Medical systems) for 12 min at 37°C, followed by ChromoMap DAB Detection Kit (Ventana Medical Systems). Slides were counterstained with Hematoxylin and Bluing Reagent (Ventana Medical Systems).
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3

Multiplex Immunohistochemistry for Immune Profiling

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Details on mutational analysis and immunohistochemical (IHC) staining for PD-L1 expression and CD8 infiltration was previously reported [9 (link)]. Double staining CD3 (yellow) followed by CD56 (purple) of whole slide sections prepared from FFPE resection specimens was performed on a Discovery Ultra autostainer. Slides were deparaffinised in the instrument and heat-induced antigen retrieval was carried out using Cell Conditioning 1 (CC1, Ventana Medical Systems) for 32 min at 95 °C. The CD3 was detected in the first sequence using clone SP7 (1/100 dilution, 32 min at 37 °C, ThermoScientific). CD3 bound antibody was visualized using Anti-Rabbit NP (Ventana Medical systems) for 12 min at 37 °C followed by Anti-NP AP (Ventana Medical systems) for 12 min at 37 °C, followed by the Discovery Yellow detection kit (Ventana Medical Systems). In the second sequence of the double staining procedure CD56 was detected using clone MRQ-42 (1:2000 dilution, 32 min at 37 °C, Cell Marque). CD56 was visualized using Anti-Rabbit HQ (Ventana Medical systems) for 12 min at 37 °C followed by Anti-HQ HRP (Ventana Medical systems) for 12 min at 37 °C, followed by the Discovery Purple Detection Kit (Ventana Medical Systems). Slides were counterstained with Hematoxylin and Bluing Reagent (Ventana Medical Systems).
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4

Bladder Cancer Tissue Microarray Immunohistochemistry

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A bladder cancer tissue microarray (TMA), which contains 80 formalin-fixed, paraffin-embedded (FFPE) biopsy specimens in duplicate, was obtained from the University of British Columbia (30 (link)). All studies involving human subjects were performed with approval from an Institutional Review Board, and all human studies were conducted in compliance with the Declaration of Helsinki. Written informed consent was obtained prior to collecting the biopsy samples. Sections of FFPE tissue were placed into the Ventana Discovery Ultra automated slide stainer. Antigen retrieval was performed using heat-inactivated antigen retrieval buffer (Tris-EDTA) according to the manufacturer instructions (Roche) and then stained with a rabbit polyclonal CDCP1 primary antibody (Cell Signaling Technology, #4115S, 1:50). Secondary antibodies (Anti-Rabbit HQ and HQ-HRP, from Ventana) were incubated for 12 min each, and DAB was used for detection for single stains. Slides were counterstained with hematoxylin per standard protocol. H-scores for CDCP1 staining were assigned by two independent pathologists (1+, 2+ and 3+ multiplied by the percentage), and the average of the H-scores was calculated.
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5

Immunohistochemical Detection of proNGF

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Sections (4 microns) were prepared from archival, formalin-fixed, paraffin-embedded tissue blocks immediately prior to staining. Immunohistochemistry was performed using the Ventana Discovery automated slide stainer (Roche Medical Systems, Tucson, AZ, USA). The primary antibody was an anti-rabbit polycloncal proNGF antibody (Ab9040, Merck Millipore, Darmstadt, Germany), which has been previously validated in our laboratory [11 (link)] and was reoptimised for automated tissue processing at a dilution of 1/350. Antigen-retrieval was performed using Ribo-CC solution, (pH 6, Ventana, Roche, North Ryde, NSW, Australia), with primary antibody incubation for 32 min, secondary anti-rabbit HQ for 16 min at 37 °C (Ventana, Roche, North Ryde, NSW, Australia) and tertiary anti-HQ (Ventana, Roche, North Ryde, NSW, Australia) for 16 min at 37 °C. Manual counterstaining was performed using Mayer’s haematoxylin for 10 s and Scott’s Tap Water for 30 s, followed by dehydration, clearing and mounting. Negative controls were prepared using nonspecific IgG isotype controls, and without the addition of primary antibody (Appendix A).
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6

Immunofluorescence and IHC Analysis of Engrafted Mouse Brains

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To collect the brain samples, engrafted mice were euthanized on the indicated analysis date. Tissue was fixed in 4% PFA for 1 day and then held in 30% sucrose for 2 days at 4°C. Thick sections (150 μm) were prepared by a Vibratome (VT1200; Leica, Wetzlar, Germany) and then incubated in blocking solution (15% normal goat serum/PBS) for 1 h at RT. Sections were incubated in anti-mCD31 (3528: Cell Signaling Technology, Danvers, MA, USA) or anti-mGFAP (ab4674; Abcam) and anti-hVEGF-AA (sc-152; Santa Cruz Biotechnology, Dallas, TX, USA) or anti-hIL-15 (ab55276; Abcam) in blocking solution overnight at 4°C, washed 3× in PBS, and incubated in anti-mouse IgG-AF647 (A21237; Thermo Fisher), anti-rabbit-IgG-AF555 (A32732; Thermo Fisher) or anti-chicken IgG-Rhodamine (703-295-155; Jackson ImmunoResearch) at 1:2000 in blocking solution for 1 h at RT. After 3 washes, sections were mounted with Prolong Gold Antifade Mountant with DAPI (P36935; Thermo Fisher) for imaging by a confocal microscope. For IHC of formalin-fixed paraffin-embedded brain, 5-μm slices were mounted on charged slides, deparaffinized, and stained on the Ventana Discovery Platform (Roche) with anti-hCD10 antibody (ab82073; Abcam) and anti-rabbit HQ (760–4815; Roche).
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7

Immunohistochemical Analysis of Metastatic Melanoma

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FFPE biopsies for 4 participants (001, 006, 008, 010) collected at baseline, week 9 and week 22 were confirmed to contain metastatic melanoma using H&E stained sections by a pathologist (REV), with the exception of 001 Week 9 biopsy which did not contain viable melanoma. FFPE tumour biopsies were sliced into 4 μm sections and processed for 3′,3′-diaminobenzidine (DAB) immunohistochemistry using a Ventana Discovery Ultra (Roche, USA) by the Hunter Cancer Biobank. Sections were labelled for HLA-A using recombinant Anti-HLA-A antibody (EP1395Y) (AbCam, USA). All steps from baking to chromogen addition were performed automatically by the Ventana Discovery Ultra. Tissue sections were baked to slides and deparaffinized, and antigen retrieval then occurred at 95°C/pH 9 with a total incubation time of 24 minutes prior to the addition of the primary antibody. Addition of the primary antibody was followed by a 32-minute incubation at 36°C. Slides were then incubated with secondary antibody Anti-Rabbit HQ (Roche) for 20 minutes at 36°C. Slides were digitally scanned using the Aperio™ Digital AT2 Pathology System (Leica Biosystems, Australia) for analysis.
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