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1

Taxol Synthesis Pathway Gene Amplification

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The internal transcribed spacer (ITS) fragments and 10-deacetylbaccatin III-10-O-acetly transferase (dbat) gene were amplified by using universal primers [18 (link)] ITS1 (5ʹ-TCCGTAGGTGAACCTGCGG-3ʹ); ITS4 (5ʹ-TCCTCCGCTTATTGATATGC-3ʹ);dbat F (5ʹ-GGGAGGGTGCTCTGTTTG-3ʹ) and dbat R (5ʹ-GTTACCTGAACCACCAGAGG-3ʹ) were purchased from Sigma Aldrich (USA) and Bioservice respectively. The standard PCR reaction of 25 μL consisted of 3 μL genomic DNA (∼100 ng), 1.5 μL forward and reverse primers each (10 μM), 0.4 μL DNA Taq polymerase (2 U), 2.5 μL 10X Taq buffer (Thermo), 2.5 μL MgCl2 (25 mM), 2.5 μL dNTP mix (2 mM), and 11.1 μL nuclease-free water (Thermo). The PCR reaction was performed by initial denaturation at 94 °C (3 min), followed by 30 cycles at 94 °C (30 s), 55 °C (30 s), 72 °C (1 min) and final extension at 72 °C (5 min) using thermocycler (Eppendorf Mastercycler™, Germany). Besides this, taxadiene synthase (ts) and C-13 phenylpropanoid side chain-CoA acyltransferase (bapt) genes involved in the taxol synthesis pathway were also screened for PCR amplification using primer sets for ts and bapt [19 (link)]. The reaction and temperature profile for ts and bapt gene were similar for ITS gene, as mentioned above. Finally, the PCR products of ITS and dbat genes were analyzed in 2 % agarose gel and visualized using Gel Doc system (CI50 Azure Biosystem, USA).
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2

Chondrogenic Differentiation Pellet Protocol

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Chondrogenic differentiation followed the protocol of Hatakeyama et al., which required the use of a cellular pellet.21 Cells at a density of 5.0 × 105 cells/mL were added to 15-mL polypropylene tubes (Falcon; BD, Franklin Lakes, NJ) and centrifuged at 450 g for 10 minutes.16 (link) The supernatant was discarded, leaving the cellular pellet. Chondrogenic differentiation media contained high-glucose DMEM, 10 ng/mL transforming growth factor-β-1 (TGF-β-1, R&D Systems, Minneapolis, MN), 100 nM dexamethasone (Sigma-Aldrich), 50 μg/mL ascorbate-2-phosphate (Sigma-Aldrich), 40 μg/mL proline (Sigma-Aldrich), 100 μg/mL pyruvate (Sigma-Aldrich), and 50 mg/mL liquid media supplement (ITS+1; Sigma-Aldrich; containing bovine insulin, human transferrin, sodium selenite, bovine serum albumin, and linoleic acid). Control media were similar, except TGF-β-1 was not added. During medium changes, it was important to not aspirate the pellet following centrifuging of the sample. For microscopic analysis, pellets were dehydrated in a series of alcohols, embedded in paraffin, cut into 5-μm sections, and stained with Alcian Blue and type II collagen. Chondrogenic gene expression was evaluated by measuring collagen type II alpha 1 (COL2A1; Hs00264051_m1) and sex-determining region Y-box 9 (SOX9; Hs00165814_m1).22 (link)
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3

Multilineage Differentiation of Pb2+-Exposed Cells

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The Pb2+ exposed cell lines were replated at a density of 1000 cells/cm2 in 6-well plates and were grown to confluence and subjected to differentiation into adipogenic, chondrogenic, and osteogenic lineages according to the method described earlier [24 (link)]. The adipogenic lineage was initiated in a 3-week culture period by inducing the cells with 10% FBS, 200 μM indomethacin, 0.5 mM 3-Isobutyl-1-methylxanthine (IMBX), 10 μg/mL insulin, and 1 μM dexamethasone (all reagents from Sigma Aldrich). Lipid droplets were visualized by staining with Oil Red O staining (Sigma Aldrich). For the chondrogenesis differentiation, the cells were cultured in a media supplemented with ITS+1 (Sigma Aldrich), 50 μM of L-ascorbic acid-2 phosphates, 55 μM of sodium pyruvate (Invitrogen), 25 μM of L-proline (Sigma Aldrich), and 10 ng/mL of the transformation growth factor-beta (TGF-β) (Sigma Aldrich). Assessment of the proteoglycans accumulation was visualized by the Alizarin Blue staining (Sigma Aldrich). The osteogenic differentiation was stimulated in a 3-week culture period in a media supplemented with 10% FBS, 10−7 M dexamethasone, 10 mM-glycerol phosphate (Fluka, Buchs, Switzerland), and 100 μM of L-ascorbic acid-2 phosphate. The assessment of calcium accumulation was visualized by using the von Kossa staining technique (Sigma Aldrich).
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4

Chondrogenic Differentiation of heMSCs

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All heMSC-microcarrier constructs derived from either spinner or shake flask cultures and cell-only pellets derived from tissue culture plastic (at 70% confluency) were generated by seeding cells attached to microcarriers or cells only in clear round-bottom ultra-low attachment 96-well plates (Corning) at 1 construct or 1 pellet per well in MSC growth medium at day 0 of differentiation. After 1 day, they were then differentiated in chondrogenic differentiation medium containing DMEM-high glucose (Gibco), 1 mM sodium pyruvate (Gibco), 100 nM dexamethasone (Sigma), 0.1 mM l-ascorbic acid-2-phosphate (Sigma), 1% vol/vol ITS + 1 (Sigma), l-proline (Sigma), 1% vol/vol penicillin/streptomycin (Gibco), and 100 ng/ml recombinant human BMP2 (CHO-derived; R&D Systems), with a medium change every 2 to 3 days for a total of either 21 days for the screening study or 28 days for all other experiments.
The differentiating culture was tested at day 21 for the screening study and weekly for 28 days for all other experiments.
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5

Adrenal H295R Cell Culture and Transfection

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H295R, an adrenal cell line with a steroid secretion pattern similar as that of freshly isolated adrenocortical cells [36 (link)–38 (link)], was purchased from ATCC and cultured in Dulbecco’s modified Eagle’s/F12 medium (DMEM/F12, Gibco, Life Technologies) supplemented with 5% bovine Cosmic calf serum (HyClone, GE), 1% ITS+1 (Sigma), 200 UI/ml penicillin, and 200 μg/ml streptomycin sulfate (Gibco, Life Technologies) at 37 °C and 5% CO2. For ectopic expression of the OXE-R in H295R cells, a 1.5-kb fragment of OXER1 cDNA was cloned from this cell line and inserted into pBABE to generate pBABE-OXER1. This construct was used for the generation of the stable cell line H295R-OxeR1, as described elsewhere [35 (link)].
The following reagents were used: 5-oxo-ETE (Santa Cruz), 8Br-cAMP (Sigma), angiotensin II (Sigma), phorbol 12-myristate 13-acetate (PMA, LC Laboratories), zileuton (5-LOX inhibitor, Cayman Chemical), H89 (PKA inhibitor, Calbiochem), PD98059 (MEK1/2 inhibitor, Calbiochem), SB203580 (p38 inhibitor, Cell Signaling Technology), wortmannin (PI3K inhibitor, Sigma), Gö6976 (inhibitor of classical PKCs, Tocris Bioscience), GF109203X (“pan” PKC inhibitor, Tocris Bioscience). Concentrations are indicated in the corresponding figure legends. 5-oxo-ETE is provided by Santa Cruz at a concentration of 0.3 mM in ethanol (vehicle).
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6

Intervertebral Disc Isolation and Culture

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Tails from bovines were obtained from a local abattoir. As we used leftovers of the slaughterhouse, no approval of an ethical committee was required according to Chinese regulations. IVD isolation and cultivation were carried out as previously described on day 0 [19 (link)]. In brief, after dissecting the surrounding soft tissue, individual IVDs with endplates were resected with a band saw. The endplates were rinsed with phosphate-buffered saline (PBS) using an APEXPULSE Disposable Pulse Lavage system (Apex, Guangzhou, China). Then, the IVDs were washed with PBS containing 10% penicillin/streptomycin (Gibco, Waltham, MA) for 15 minutes on a shaking table. The IVDs were then incubated with Dulbecco's modified Eagle's medium (DMEM, Sigma-Aldrich, Munich, Germany) supplemented with 2% fetal calf serum (FCS), 1% penicillin/streptomycin, 1% ITS+1 (Sigma-Aldrich), 50 μg/ml L-ascorbic acid (Sigma-Aldrich), and 0.1% Primocin (InvivoGen, San Diego, CA, USA) in a humidified (85%) atmosphere with 5% CO2 at 37°C. All IVDs were cultured under physiological loading (0.02–0.2 MPa; 0.2 Hz; 1 hour/day) within a custom-designed bioreactor from day 1 (Figure 1(a)). The culture medium was replaced once a day after physiological loading. IVDs from the same tail were randomly assigned to different groups. IVDs subjected to only physiological loading culture were assigned to control (CON) groups.
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7

Viral Infection of Primary Airway Epithelial Cells

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Semi-confluent cells (~ 80%) were first washed in PBS, followed by the addition of RV43 (MOI20) or H3N2 (MOI5 or 4x105pfu/ml) in a final volume of 500 μl bronchial epithelial cell basal media (BEBM; LONZA Clonetics Walkersville USA) with 0.1% insulin-transferrin-sodium selenite liquid media supplement (ITS+ 1 Sigma-Aldrich Co, Castle Hill, NSW, Australia). During infection, pNECs were incubated either at room temperature with shaking (RV43) or 37 °C without shaking (H3N2). After one hour, virus-containing media was removed, cells were washed twice with PBS and 1 ml of fresh BEBM with 0.1% ITS was added to each well. All experiments were performed in duplicate, or where possible, triplicate. After 48 h of incubation at 33 °C (RV43) or 35 °C (H3N2), supernatant was collected, briefly centrifuged to remove any cellular debris and stored at -80 °C for subsequent cytokine/chemokine and viral analyses.
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8

Chondrogenesis of Human MSCs in Pellet Culture

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For chondrogenesis in pellet cultures, isolated hMSCs (5 × 105) were resuspended and spun in a 15-mL polypropylene tubes, centrifuged at 600g for 6 min and resuspended in chondrogenic medium consisting of high glucose DMEM containing 1 mM sodium pyruvate, 100 nM dexamethasone, 1% ITS + 1 (Sigma) [insulin (5 mg/mL), transferrin (5 ng/mL), and sodium selenite (5 ng/mL), 1% PS and bovine serum albumin (BSA; 1 mg/mL)], 40 μg/ml proline, and ascorbic acid (50 μg/mL) (all from Sigma-Aldrich, Poole, U.K., http://www.sigmaaldrich.com), and 10 ng/mL recombinant human transforming growth factor (TGF)-beta3 (Peprotech, Rocky Hill, NJ, USA). Cells were centrifuged at 600g for 5 min to form pellets. The pellets were cultured in a total of 1 mL chondrogenic medium per tube and incubated at 37 °C in 5% humidified CO2. The medium was changed every 2 to 3 days and pellets were centrifuged with every medium change.
Pellets were harvested at 7 and 21 days of culture and were washed with PBS to remove medium then transferred to RNase-free 1.5-mL micro centrifuge tubes for RNA isolation. Others were harvested at 21 days for histological and immunohistochemical analyses.
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9

Chondrogenic Differentiation of Subacromial Bursa Cells

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The methodology for chondrogenic differentiation was derived from a previous study.24 To start, 250,000 passage-3 cells from subacromial bursa were placed in a 15-mL polypropylene tube (Falcon; BD, Franklin Lakes, NJ) and centrifuged at 450g for 10 minutes to create cellular pellets. The pellets were cultured in 400 μL of chondrogenic medium containing high-glucose DMEM, 10 ng/mL transforming growth factor-β-1 (R&D Systems, Minneapolis, MN), 100 nM dexamethasone (Sigma-Aldrich), 50 μg/mL ascorbate-2-phosphate (Sigma-Aldrich), 40 μg/mL proline (Sigma-Aldrich), 100 μg/mL pyruvate (Sigma-Aldrich), and 50 mg/mL liquid media supplement (ITS+1; Sigma-Aldrich; containing bovine insulin, human transferrin, sodium selenite, bovine serum albumin, and linoleic acid). The medium was replaced every 3 to 4 days for 3 weeks. At day 21, the size and weight of the cellular pellets were measured and compared for each sample. For histologic examination, the pellets were stained with Toluidine blue, Alcian Blue, and type II collagen following alcohol dehydration, paraffin embedding, and sectioning (5-μm).21 (link),24 ,25 (link)
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10

Multilineage Differentiation of Stem Cells

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Adipogenic, chondrogenic, and osteogenic differentiation of SHED and ASC were carried out as previously described at the third passage [19 (link)]. The cultures were initiated at a density of 1000 cells/cm2 in six-well plates and grown until confluence and then subjected to differentiation into adipogenic, chondrogenic, and osteogenic lineages. Briefly, the adipogenic lineage was initiated by inducing the cells with 10% FBS, 200 μM indomethacin, 0.5 mM 3-isobutyl-1-methylxanthine (IMBX), 10 μg/mL insulin, and 1 μM dexamethasone (all from Sigma-Aldrich). Lipid droplets were visualized using oil red staining (Sigma-Aldrich). For chondrogenic differentiation, cells were cultured in medium supplemented with ITS+1 (Sigma-Aldrich), 50 μM L-ascorbic acid 2-phosphate, 55 μM sodium pyruvate (Invitrogen), 25 μM L-proline (Sigma-Aldrich), and 10 ng/mL transformation growth factor-β (TGF-β; Sigma-Aldrich). Assessment of proteoglycan accumulation was visualized by Alcian Blue staining (Sigma-Aldrich). Osteogenic differentiation was stimulated in a 3-week culture period in medium supplemented with 10% FBS, 10–7 M dexamethasone, 10 mM glycerol phosphate (Fluka, Buchs, Switzerland), and 100 μM L-ascorbic acid 2-phosphate. The assessment of calcium accumulation was visualized using von Kossa staining (Sigma-Aldrich).
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