The largest database of trusted experimental protocols

9 protocols using pexidartinib

1

Microglia depletion via pexidartinib

Check if the same lab product or an alternative is used in the 5 most similar protocols
The compound pexidartinib (PLX3397; S7818) was purchased from Selleck Chemicals and formulated in irradiated D10001i Rodent Diet standard chow by Research Diets at a dose of 290 mg per kilogram of chow. At P20 WT and Cnp-Cre Jab1fl/fl mice were fed with standard diet or PLX3397 (290 mg/kg) chow for 21 days to reduce microglia cells by more than 99% in the CNS, as previously described (25 (link)).
+ Open protocol
+ Expand
2

Cytotoxicity Evaluation of Anticancer Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quizartinib was purchased from AdipoGen Life Sciences. Pexidartinib was purchased from Selleck Chemicals LLC. MTS, (3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium) was purchased from Promega. Dimethyl sulfoxide (DMSO), fetal bovine serum (FBS), Gibco cell culture media (RPMI-1640 and IMDM) and antibibiotics (1% penicillin-streptomycin, Pen-Strep) were bought from Thermo Fisher Scientific.
+ Open protocol
+ Expand
3

Pexidartinib-Induced Microglia Depletion

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pexidartinib (PLX-3397, SelleckChem, S7818), a CSF1R inhibitor, was administered ad libitum to P21 wildtype C57Bl/6 mice at 290 mg/kg in AIN-76A Rodent Diet (Research Diets Inc., D10001) for 7 days to eliminate microglia44 (link). At this stage flow cytometry showed around 95% decrease in microglia cell number (Extended Data Fig. 1). These microglia-depleted animals were used for optic nerve crush (see below) and neuroinflammatory investigation (with i.p. injection of 5 mg/kg LPS).
+ Open protocol
+ Expand
4

Modeling Castration-Resistant Prostate Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
MyC-CaP (ATCC, Manassas, VA, USA) and RAW264.7 (RAW) (National Collection of Authenticated Cell Cultures at Shanghai, China) were cultured in DMEM media supplemented with 10% charcoal stripped fetal bovine serum (FBS), which mimics the low-androgen condition in castration-resistant prostate cancer, and 1× Penicillin–Streptomycin. PC-3 (National Collection of Authenticated Cell Cultures at Shanghai, China) and C4-2 (ATCC, Manassas, VA, USA) were cultured in RPMI 1640 media supplemented with 10% FBS and 1× Penicillin–Streptomycin. All cells were cultured in 37 °C, 5% CO2 humidified cell incubators. Pexidartinib was purchased from Selleck (Cat#S7818, Shanghai, China). The overexpression plasmid of murine CXCL12 was developed through Gibson assembly of the PCR product from the forward primer 5′-CGCCAGAACACAGGACCGGTTCTAGAATGGACGCCAAGGTCGTC-3′ and the reverse primer 5′-CATCGTCTTTGTAATCCATCTCGAGCTTGTTTAAAGCTTTCTCCAGGTAC-3′, and the double digested plasmid lentiCRISPRv2 hygro from Addgene (Cat#98291, Watertown, MA, USA) was developed with Gibson assembly mastermix (Cat#E2611S, NEB Biolabs, Ipswich, MA, USA). The ELISA kit used to examine the CXCL12 from RAW cells was purchased from R&D Systems (Cat#MCX120, Minneapolis, MN, USA), and ELISA was undertaken in accordance with the manufacturer’s protocol.
+ Open protocol
+ Expand
5

Screening Novel Kinase Inhibitors in Ba/F3 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pexidartinib and BLZ945 were purchased from Selleckchem. LOXO-292 (Selpercatinib) was purchased from Active Biohem. Drug studies were conducted in vitro using fluorescence-activated cell-sorted DAPIeGFP+ Ba/F3 cells that stably expressed the MIGII-empty vector, MIGII-CSF-1R (Y546_K551del), MIGII-CSF-1R (W450_E456del), CSF-1R (Y561_I564del), and CSF-1R (G936S) and MIGII-NCOA4-RET constructs using the CellTiter-Glo Luminescent Cell Viability Assay from Promega Corporation, according to the manufacturer’s instructions. The MIGII CSF-1R (Y546_K551del), MIGII-CSF-1R (W450_E456del), CSF-1R (Y561_I564del), and CSF-1R (G936S) and MIGII-NCOA4-RET, fluorescence-activated cell-sorted Ba/F3 cells were maintained in RPMI + 10% FBS + penicillin and streptomycin medium, without mouse IL-3. MIGII-EV was maintained in RPMI + 10% FBS + penicillin and streptomycin with recombinant mouse IL-3 (1 ng/ml).
+ Open protocol
+ Expand
6

Screening Novel Kinase Inhibitors in Ba/F3 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pexidartinib and BLZ945 were purchased from Selleckchem. LOXO-292 (Selpercatinib) was purchased from Active Biohem. Drug studies were conducted in vitro using fluorescence-activated cell-sorted DAPIeGFP+ Ba/F3 cells that stably expressed the MIGII-empty vector, MIGII-CSF-1R (Y546_K551del), MIGII-CSF-1R (W450_E456del), CSF-1R (Y561_I564del), and CSF-1R (G936S) and MIGII-NCOA4-RET constructs using the CellTiter-Glo Luminescent Cell Viability Assay from Promega Corporation, according to the manufacturer’s instructions. The MIGII CSF-1R (Y546_K551del), MIGII-CSF-1R (W450_E456del), CSF-1R (Y561_I564del), and CSF-1R (G936S) and MIGII-NCOA4-RET, fluorescence-activated cell-sorted Ba/F3 cells were maintained in RPMI + 10% FBS + penicillin and streptomycin medium, without mouse IL-3. MIGII-EV was maintained in RPMI + 10% FBS + penicillin and streptomycin with recombinant mouse IL-3 (1 ng/ml).
+ Open protocol
+ Expand
7

Microglia Depletion and Repopulation in Parkinson's Disease

Check if the same lab product or an alternative is used in the 5 most similar protocols
PLX3397 (Pexidartinib; Selleckchem, USA) was formulated in AIN‐76A standard chow (FBSH Biopharmaceutical Co., Ltd., Shanghai, China) at a concentration of 290 mg/kg. Normal AIN‐76A diet was served as the control.
Mice were fed with a PLX3397‐formulated diet (PLX3397) for 7, 10, 14 and 21 days to determine the optimal days for microglial elimination and repopulation in the nigrostriatal pathway (n = 3 per group). After 21 days, a subset of mice with the PLX3397 diet were switched to a control diet (CD) for 4 and 7 days (n = 3 per group) to repopulate microglia.
Mice were fed with a PLX3397 diet or a control diet for 21 days and followed by a diet according to the requirements of different experiments to clarify the function of microglia in PD (n = 4‐5 per group). The design of each experiment was shown as a diagram, respectively.
+ Open protocol
+ Expand
8

Melanoma Cell Lines and Kinase Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human melanoma cell line M230 was provided by Pr A. Ribas and was cultured in RPMI 1640 (Invitrogen, Cergy Pontoise, France) containing 10% (v/v) fetal calf serum (FCS; Perbio, Bredières, France), L-glutamin (2 mM; Gibco, Cergy pontoise, France), antibiotics (100 U/mL penicillin and 1000 μg/mL streptomycin; Gibco). Human melanoma cell lines HBL and LND1 were provided by Pr G E Gahnem and were cultured in F10 (Invitrogen) containing 10% (v/v) fetal calf serum (FCS; Perbio), L-glutamin (2 mM; Gibco), antibiotics (100 U/mL penicillin and 1000 μg/mL streptomycin; Gibco). Imatinib, nilotinib, sorafenib, dasatinib, pexidartinib, and trametinib were from Selleck Chemicals, dissolved in DMSO and used at 1 µM final concentration for KIT inhibitors and 0.2 µM for trametinib. FGF2 was from PeproTech and used at 20 ng/mL final concentration.
+ Open protocol
+ Expand
9

Pexidartinib Depletion of Macrophages

Check if the same lab product or an alternative is used in the 5 most similar protocols
The CSF1R inhibitor pexidartinib (Selleck Chemicals) was used to deplete macrophages. pexidartinib was initially suspended and stored at 200 mg/mL in DMSO, and further suspended in 5% DMSO, 45% polyethylene glycol 3000 (Sigma-Aldrich), 5% Tween-80 (Sigma-Aldrich), and 45% ddH2O for a working concentration of 10 mg/mL. FVB/N mice bred in-house at 5 weeks of age were given a working solution of pexidartinib at 45 mg/kg once daily by oral gavage for 2 weeks. Mammary glands were then either fixed in 4% paraformaldehyde for histology, processed for flow cytometry or lysed for HA analysis by ELISA as previously described (Bohrer et al., 2014 (link)). HA concentrations were normalized to mammary gland weight.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!