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Donkey α rabbit cy3

Manufactured by Jackson ImmunoResearch
Sourced in United States

Donkey α-rabbit Cy3 is a secondary antibody conjugate that can be used to detect and visualize rabbit primary antibodies in various immunological techniques. It is composed of a donkey-derived anti-rabbit antibody coupled to the fluorescent dye Cy3, which emits light in the red-orange spectrum when excited.

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10 protocols using donkey α rabbit cy3

1

Imaging C. elegans Embryonic Development

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Gravid worms were dissected in water on a coverslip to release embryos and transferred to 0.1% poly-lysine-coated slides and frozen on dry ice. Eggshells were cracked by flicking off the coverslip and embryos were fixed in methanol before staining with mouse α-CED-1 antibody [1:500, gift of Chonglin Yang (Chen et al., 2010 (link))] or rabbit α-VPS-32 antibody [1:1000, gift of Renaud Legouis (Michelet et al., 2009 (link))], and chicken α-GFP (1:500, 0511FP12 Aves, RRID: AB_2307313). Embryos were then stained with fluorescent secondary antibodies from Jackson ImmunoResearch: Alexa488 donkey α-mouse (Lot: 108424, RRID: AB_2341099), or Cy3 donkey α-rabbit (Lot: 109623, RRID: AB_2307443), and Alexa488 donkey α-chicken (Lot: 108862, RRID: AB_2340375). Slides were counterstained with DAPI to label DNA and mounted using DABCO.
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2

GFAP Immunohistochemistry in Hippocampus

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Inmunohistochemistry (IHC) of the astrocytic marker GFAP was carried out in the hippocampus. Cryostat sections were washed with PB 0.1 M and blocked with PB 0.1 M, 0.1%Triton X-100 and 3% Fetal Bovine Serum (FBS) for 60 min at room temperature. Sections were incubated 16 h at 4°C with rabbit antibody α-GFAP (DAKO, Z0334) 1:300 in blocking buffer. Next, slices were washed three times with PB 0.1 M and incubated with the secondary antibody Cy3 donkey α-rabbit (Jackson, 711–165-152) 1:500 for 2 hours. Nuclei were stained with nuclear marker 4,6-diamidino-2-phenylindoledihydrochloride (DAPI; Sigma) 1:1000 and washed again to finally cover them with a coverslip and Mowiol and DABCO (50 μL/mL). Images were captured with confocal microscope SP8 (Leica) and GFAP positive astrocytes of the CA1 area of the HC were analyzed by measuring the mean signal intensity per μm3. At least 5 slices per animal were measured. For this purpose, eight animals per condition were analyzed.
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3

Immunohistochemical Profiling of Lhx Factors

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Immunohistochemistry was performed on 20 μm cryosections as described previously30 using the following primary antibodies: guinea pig α‐pan‐Lhx9 (1:10 000),21 rabbit α‐LH2 (recognizes both Lhx2 and Lhx9, 1:1000),6 α‐Lhx9ab (1:10 000, generated in this study), goat α‐GATA4 (1:200, Santa Cruz, catalogue sc‐2537), chicken α‐GFP (1:3000, ABCAM, catalogue ab13970 RRID:AB_300798), chicken α‐GFP (1:1000, Aves Labs, catalogue GFP‐1020 RRID:AB_10000240). Secondary antibodies were as follows: donkey α‐rabbit—Cy3 (1:1000; catalogue 711‐165‐152, RRID: AB_2307443), donkey α‐guinea pig—FITC (1:500; catalogue 706‐095‐148, RRID:AB_2340453), donkey α‐goat Cy3 (1:500; catalogue 705‐165‐003) from Jackson ImmunoResearch Europe Ltd. and goat α‐chicken—FITC (1:1000; catalogue F‐1005, RRID:AB_2313516, Aves Labs, Oregon). DAPI was used to delineate nuclei. Primary antibodies were incubated overnight at 4°C, secondary antibodies were incubated at room temperature.
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4

Immunohistochemistry and In Situ Hybridization of Drosophila Imaginal Discs

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Imaginal disc immunohistochemistry and in situ hybridization were performed as previously described (Tanaka-Matakatsu and Du, 2008 (link)). Primary antibodies were used at the following dilutions: rabbit α-Ey 1:1000 (Halder et al., 1998 (link)) (gift from Uwe Walldorf), rabbit α-Da DAP7555 1:50 (Cronmiller and Cummings, 1993 (link)), mouse α-Eya 1: 40 (DSHB), rabbit α-Ato 1:2000 (Jarman et al., 1995 (link)), mouse α-β gal JIE7 Concentrated 1:500 (DSHB), mouse α-Glass 1:20 (DSHB), mouse α-Elav 1:50 (DSHB), mouse α-Myc 1:40 (9E10, DSHB), mouse α-GFP 1:500 (BD Bioscience). Dye conjugated secondary antibodies were from Jackson ImmunoResearch and used at 1:500 dilution: donkey α-mouse Cy3, donkey α-rabbit Cy3, goat α-mouse Cy2, goat α-rabbit-FITC, donkey anti-rat Cy5. DAPI was used at 1:100 (5ug/ml) for DNA staining. Images were taken using a Zeiss AxioImager microscope with an ApoTome.
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5

Immunofluorescence Visualization of pSTAT3 and Oxytocin

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Two series of the brain sections were separately analyzed for oxytocin and pSTAT3 expression using immunofluorescence protocol optimized for the visualization of pSTAT3 [see (Levin et al., 2004 (link)) for details]. In brief, slides were blocked in 4% NDS, 0.4% Triton and 1% BSA in KPBS for 20 min and then incubated in rabbit-α-pSTAT3 (1:500; 9145 from Cell Signaling Technology) or mouse-α-Oxytocin (1:1000; Cat # MAB5296; Lot # 3061232; Chemicon; Temecula, CA, United States) in 1% NDS, 0.4% Triton and 1% BSA in KPBS for two overnights at 4°C. After primary incubation slides were rinsed in KPBS, followed by a secondary incubation step in donkey-α-rabbit–Cy3 or donkey-α-mouse–Cy3 (both 1:100; Jackson ImmunoResearch, Laboratories) in 1% NDS and 0.3% Triton in KPBS for 2 h at room temperature protected from light. Slides were rinsed again in KPBS, counterstained in DAPI for 4 min and washed in KPBS. After 30 min air drying slides were cover-slipped with Vectashield® (Vectashield® Hardset™; Antifade Mounting Medium for Fluorescence; Ref # H-1400; Lot # ZH0114). Slides were stored at 4°C in the dark until further analysis.
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6

Immunostaining of Neuronal Proteins

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Neurons were fixed in 4% paraformaldehyde for 10 min and washed four times with phosphate-buffered saline (PBS). Permeabilization of the membrane was performed by adding 0.1% Triton X-100 (Sigma-Aldrich, Darmstadt, Germany) in a blocking solution (PBS with 0.1% BSA and 5% goat serum) for 4 min. After washing once with PBS, a blocking solution was added to the coverslips for 15 min. Primary antibodies were added, and the neurons were incubated for one hour at room temperature. The coverslips were washed three times with PBS and incubated at room temperature for one hour with the secondary antibodies. After washing three times with PBS, the coverslips were mounted in Fluoromount (Sigma-Aldrich, Darmstadt, Germany). The primary antibodies used for immunostaining were: mouse α-FGF14 (1:500; clone N56/21, catalog #75 096, lot 413-8RR-61, NeuroMab, Davis, CA, USA); and rabbit α-MAP2 (1:1000; catalog #AB5622, lot 2795016, Millipore, Burlington, MA, USA). The secondary antibodies used were donkey α-mouse Alexa488 (1:1000, Jackson, Lansing, MI, USA, 715-545-150) and donkey α-rabbit Cy3 (1:1000, Jackson, Lansing, MI, USA, 711-165-152).
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7

Immunostaining of Hippocampal Neurons

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Retigabine (RTG) (10 μM) was added to hippocampal neurons for 24 h (for VGlut staining) or 48 h (for VGAT staining) prior to fixation, meaning that the cells (control and treated) were at the same age when fixed for immunostaining (13 DIV). Neurons were fixed in 4% paraformaldehyde for 10 min and washed four times with phosphate buffered saline (PBS). Permeabilization of the membrane was performed by adding 0.1% Triton X-100 (Sigma) in a blocking solution (PBS with 0.1% BSA and 5% goat serum) for 4 min. After washing once with PBS, blocking solution was added to the coverslips for 15 min. Primary antibodies were added, and the neurons were incubated for 1 h at room temperature. The coverslips were washed three times with PBS and incubated at room temperature for 1 h with the secondary antibodies. After washing three times with PBS, the coverslips were mounted in Fluoromount (Sigma). The primary antibodies used for immunostaining were: rabbit α-Kv7.3 (1:150, Alomone Labs), mouse α-AnkyrinG (1:500, Neuromab), mouse α-FGF14 (1:500, Neuromab, 75096), rabbit α-MAP2 (1:1000, Millipore), rabbit α-VGAT (1:500, Synaptic Systems, 131002), guinea pig α-VGlut (1:500, Millipore, AB5905). The secondary antibodies used were: donkey α-mouse Alexa488 (1:1000, Jackson, 715-545-150), donkey α-rabbit Cy3 (1:1000, Jackson, 711-165-152), and donkey α-guinea pig Cy3 (1:1000, Jackson, 706-165-148).
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8

Cell Culture and Antibody Protocols

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HEK293T cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% (v/v) fetal calf serum (FCS, Bodinco DV), 100 U/ml penicillin, 100 mg/ml streptomycin, and 2 mM L-glutamine. BHK-21 cells were cultured in Glasgow’s minimal essential medium (GMEM, Gibco) supplemented with 8% (v/v) FCS, 10% (v/v) tryptose phosphate broth (TPB), 10 mM HEPES pH 7.4, 100 U/ml penicillin, and 100 mg/ml streptomycin. MARC-145 were cultured in DMEM supplemented with 8% (v/v) FCS, 100 U/ml penicillin, and 100 mg/ml streptomycin. DMEM and cell culture supplements were obtained from Lonza.
Primary antibodies that were used were mouse-α-β-actin (A5316, Sigma-Aldrich), rabbit-α-GFP [9 (link)], mouse-α-V5 (37–7500, Invitrogen), mouse-α-myc (9E10, Roche), mouse-α-HA (ab18181, Abcam), and mouse-α-FLAG (F1804, Sigma-Aldrich). As secondary antibodies, goat-α-mouse-HRP (P0447, Dako), swine-α-rabbit-HRP (P0217, Dako), goat-α-mouse-AlexaFluor488 (A11001, Life Technologies), and donkey-α-rabbit-Cy3 (711-165-152, Jackson). The antibody α-ORF7 (P3-05-A27, MSD Animal Health) was obtained using mouse antiserum. The antibody α-nsp2/3 LV was obtained using rabbit antiserum [13 (link)].
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9

Drosophila POGLUT1 Mutations and Muscle Development

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The effect of mutations on POGLUT1 activity was assessed in terms of the development of indirect flight muscles in Drosophila [16 (link)]. Rescue experiments were performed with Mef2-GAL4 driven overexpression of POGLUT1WT and POGLUT1mutant in rumi79/79 animals, as reported previously [35 (link)]. Animals were raised at 25°C until puparium formation. After 25% pupal development, pupal indirect flight muscles were dissected and stained using standard methods. Antibodies used were mouse 22C10 1:50 (DSHB), mouse α‐FLAG M2 1:100 (Sigma), donkey α-rabbit-Cy3 1:500, donkeyα-mouse-Cy3 1:500 (Jackson Immuno Research Laboratories). Confocal imaging was performed on a Leica TCS-SP8 microscope. Myotube length measurements were performed with Amira5.2.2. Mean myotube lengths and standard deviations (SD) were calculated for pupae with the following genotypes: WT control (y w; n=3), rumi79/79 (n=3), and rumi79/79 overexpressing POGLUT1WT (n=4), POGLUT1D233E (n=3), POGLUT1R183W (n=3), POGLUT1Y57C (n=3) and POGLUT1C102F (n=3). One-way ANOVA with Tukey’s multiple comparisons test was used to determine the P-values. Images were processed with Adobe Photoshop CS5; figures were assembled in Adobe Illustrator CS5.
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10

POGLUT1 Activity Regulates Drosophila Muscle Development

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We assessed the effect of POGLUT1 activity toward the development of indirect flight muscles in Drosophila (Gildor et al, 2012). Rescue experiments were performed with fly transgenes expressing human POGLUT1wt (wild type) and human POGLUT1D233E. w1118 (wt), rumi79/79, Mef2‐GAL4/UASattB‐POGLUT1WT‐FLAG; rumi79/79, and Mef2‐GAL4/UASattB‐POGLUTD233E‐FLAG; rumi79/79 animals were raised at 18°C until puparium formation. Pupae 0–1 h after puparium formation (APF) were incubated at indicated temperatures until 25% pupal development. Pupal indirect flight muscles were dissected and stained using standard methods. Antibodies are rabbit α‐Twist 1:5,000 (Roth et al, 1989), mouse 22C10 1:50 (DSHB), mouse α‐FLAG M2 1:100 (Sigma), donkey‐α‐rabbit‐Cy3 1:500, donkey‐α‐mouse‐Cy5 1:500 (Jackson ImmunoResearch Laboratories). Confocal images were scanned using a Leica TCS‐SP5 microscope and processed with Amira5.2.2. Myotube lengths were measured using a two‐dimensional measurement tool in Amira5.2.2. Mean myotube lengths and standard deviations were calculated for rumi79/79 pupae with no rescue and rumi79/79 pupae overexpressing POGLUT1WT (n = 22) or POGLUT1D233E (n = 54). One‐way ANOVA with Tukey's multiple comparisons test was used to determine the P‐values. Images were processed with Adobe Photoshop CS5; figures were assembled in Adobe Illustrator CS5.
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