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Quantity one 4.2.1 image analysis software

Manufactured by Bio-Rad
Sourced in United States

Quantity One 4.2.1 is an image analysis software developed by Bio-Rad. The software is designed to analyze and quantify images, including those from electrophoresis gels, Western blots, and other types of biological images.

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5 protocols using quantity one 4.2.1 image analysis software

1

Western Blot Analysis of Phosphorylated GSK3α/β

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Tissue lysates and Western blotting were prepared as previously described [12] (link). Twenty micrograms of protein was separated on polyacrylamide gels (Bio-Rad Laboratories; Gladesville, NSW, Australia) and transferred to PVDF. Protein expression was identified by comparison with the mobility of protein standard. Blots were incubated with rabbit polyclonal phosphorylated (Ser21/9) GSK3α/β (#9331; Cell Signalling, Beverly, MA, USA) or rabbit monoclonal total GSK3β (#9315, Cell Signalling, Beverly, MA, USA) diluted 1/1000 in blocking buffer (3% BSA in TBS with 0.05% Tween-20) for 16 h at 4°C. Membranes were viewed and analysed using the Chemi-Doc system (Bio-Rad Laboratories; Gladesville, NSW, Australia). Semi-quantitative analysis of the relative density of the bands in Western blots was performed using Quantity One 4.2.1 image analysis software (Bio-Rad Laboratories; Gladesville, NSW, Australia). The levels of phosphorylated GSK3α/β were normalised to the levels of total GSK3β and fold change was calculated relative to the NGT group.
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2

Selenium Modulates MAPK Pathway Activation

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Western blotting was used to determine the effect of selenium on phosphorylation (i.e., activation) of the MAPK signalling pathway protein ERK. Western blotting was performed as previously described [52 (link)]. Mouse monoclonal pERK (sc-7383; Santa Cruz Biotechnology) and rabbit polyclonal ERK (sc-93; Santa Cruz Biotechnology, Dalla, Texas, USA) were used at 0.2 μg/mL. Membranes were viewed and analysed using the ChemiDoc MP system (Bio-Rad Laboratories; Gladesville, NSW, Australia). Semi-quantitative analysis of the relative density of the bands in Western blots was performed using Quantity One 4.2.1 image analysis software (Bio-Rad Laboratories, Hercules, CA, USA).
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3

Western Blot for Ras and ERK

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Protein extraction and Western blotting were performed as previously described [39 (link)]. Twenty micrograms of protein were separated into 10% polyacrylamide gels and transferred to nitrocellulose. Blots were incubated in either 1 μg/ml mouse monoclonal anti-Ras (clone RAS10; Merck Millipore; Billerica, MA, USA), 1 μg/ml mouse monoclonal antiphosphorylated (Tyr204) ERK (p-ERK) (sc-7383; Santa Cruz Biotechnology; Santa Cruz, CA), or 1 μg/ml total ERK1/2 (sc-93; Santa Cruz Biotechnology; Santa Cruz, CA, USA) prepared in blocking buffer (5% skim milk in TBS with 0.05% Tween-20) for 16 h at 4°C. Membranes were viewed and analysed using the ChemiDoc XRS system (Bio-Rad Laboratories; Gladesville, NSW, Australia). Semiquantitative analysis of the relative density of the bands in Western blots was performed using Quantity One 4.2.1 image analysis software (Bio-Rad Laboratories, Hercules, CA, USA). The levels of Ras were normalised to the levels of β-actin (Sigma, St. Louis, MO, USA). The levels of p-ERK were normalised to the levels of total ERK1/2.
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4

Quantitative Western Blot Analysis of Protein Expression

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Extraction of cytoplasmic and nuclear protein by western blotting was performed as previously described (Lim et al. 2013b) . Forty micrograms of protein was separated onto 10% KLF5 and human labour polyacrylamide gels (Bio-Rad Laboratories) and transferred to PVDF. The blots were incubated with 0.8 mg/ml rabbit polyclonal anti-KLF5, #GTX103289 (GeneTex, Inc.) diluted in blocking buffer (5% skimmed milk in TBS with 0.05% Tween-20) for 16 h at 4 8C. The membranes were viewed and analysed using the ChemiDoc XRS system (Bio-Rad Laboratories). Semi-quantitative analysis of the relative density of the bands in western blots was performed using Quantity One 4.2.1 image analysis software (Bio-Rad Laboratories). The data were normalised to b-actin or Ponceau S staining as previously described (Lim et al. 2013b) . For data normalisation, a section of the Ponceau S stained membrane was chosen. Notably, the section chosen was one that did not show variation with labour status.
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5

Western Blotting for RAF1 and MAPK1

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Western blotting was performed, as described previously (Lim et al. 2016) (link). Blots were incubated in 1 mg/ml rabbit polyclonal anti-RAF1 (GTX107763; GeneTex, CA, USA), 1 mg/ml rabbit polyclonal anti-MAPK1 (sc-93; Santa Cruz Biotechnology) or 1 mg/ml mouse monoclonal anti-phosphorylated MAPK1 (sc-7383; Santa Cruz Biotechnology) prepared in blocking buffer (5% skim milk in TBS with 0.05% Tween-20) for 16 h at 4 8C. Membranes were viewed and analysed using the ChemiDoc XRS system (Bio-Rad Laboratories). Semi-quantitative analysis of the relative density of the bands in western blots was performed using Quantity One 4.2.1 Image Analysis Software (Bio-Rad Laboratories). For the labour studies, RAF1 protein expression was normalised to Ponceau S stain, as described previously (Lim et al. 2016) (link); a section of the Ponceau S stained membrane was chosen which did not show variation with labour status.
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