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12 protocols using anti ifn γ antibody

1

Immunological Profiling of CMV in RTR

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Peripheral blood mononuclear cells (PBMC) were isolated by Ficoll density centrifugation. Plasma was stored in −80 °C and PBMC in liquid nitrogen. Plasma HCMV IgG titres were assessed using in-house ELISAs based on a lysate of fibroblasts infected with HCMV AD169, recombinant CMV gB (Chiron Diagnostics, Medfield, MA, USA) or IE-1 protein (Miltenyi Biotech, Cologne, Germany). Results were presented as arbitrary units (AU)/mL based on a standard plasma pool [14 (link)]. FcRγ and NKG2C+ NK cells (CD3CD56dim) and Vδ2 γδ T-cells were enumerated using multicolour flow cytometry, as the populations are expanded in CMV-seropositive RTR [18 (link),19 (link)]. Gating strategies are illustrated in Figure 1 and Supplementary Materials Figure S1. Enzyme-linked immunosorbent spot (ELISpot) assays utilised anti-IFNγ antibodies (MabTech, Stockholm, Sweden). Cells were stimulated with a CMV lysate, CMV pp65 peptide pool (NIH AIDS reagent program, Woburn, MA, USA) or a CMV IE-1 peptide pool (JPT, Berlin, Germany). The number of spots in unstimulated wells were subtracted from the number in stimulated wells and adjusted per 200,000 PBMC.
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2

Influenza-specific IFN-γ Response Assay

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The influenza-specific IFN-γ response pre and post-vaccination was examined by using 96 well plates pre-coated with anti-IFN-γ antibodies according to the manufacturer´s instructions (Mabtech AB, Sweden). PBMCs (4 × 105 cells per well) were added in RPMI-1640 medium supplemented with 10% fetal calf serum with negative control (medium alone) and the split virus influenza H1N1 antigens from; A/New Caledonia/20/99, A/Texas/36/91, A/Brisbane/59/07 and A/California/7/09 (X179a). Plates were incubated overnight (37°C, 5% CO2) and developed the following day. The plates were read using an Immunoscan™ reader and associated software (CTL-Europe). The negative control was subtracted from the influenza-specific response.
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3

ELISpot Assay for Viral Antigen-Specific T Cells

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ELISpot assays utilised anti-IFN-γ antibodies purchased from MabTech (Stockholm, Sweden) and cryopreserved PBMC with cell viability >95 % described elsewhere [26 (link)]. Cells were stimulated with anti-CD3 (10 ng/mL; MabTech), whole CMV lysate (described above), CEF control peptide pool [contains peptides from CMV, Epstein-Barr virus (EBV) and Influenza; 2 μg/mL; MabTech), CMV pp65 peptide pool (NIH AIDS reagent program, DAIDS, NIAID and Immunodiagnostics, Woburn, MA, USA), HLA-A*02-restricted peptides NLV (residues 495–503 of pp65) or VLE (residues 316–324 of IE-1) at 10 μg/mL (Proteomics International, Perth, Australia). Spots >10 units in size and >20 units in intensity were counted using an AID ELISpot Reader System (AID, Strassberg, Germany). Numbers of spots in unstimulated wells were subtracted from numbers in stimulated wells and adjusted per 2 × 106 PBMC.
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4

SARS-CoV-2 Spike Peptide IFN-γ ELISPOT Assay

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IFN-γ ELISPOT was performed as described previously (28 (link)). Briefly, frozen PBMCs were thawed, washed and 0.5 million cells were added to ELISpotPLUS plates pre-coated with anti-IFN-γ antibodies (Mabtech, catalog no. 3420-4AST-P1-1). The cells were stimulated with SARS-CoV-2 peptides from the S1 region of the spike protein at a concentration of 2 μg/mL along with CD28-stimulating antibody at a concentration of 0.1 μg/mL for 48 hours in a humidified incubator (37°C with 5% of CO2). Monoclonal CD3-stimulating antibody was used as a positive control and unstimulated PBMCs were used as negative controls. The detection antibody (7-B6-1-Biotin) was then added and the plate and incubated for two hours at room temperature. Afterwards, Streptavidin-ALP and then its substrate solution (BCIP/NBT-plus) were added. The reaction was left to develop until distinct spots appeared, after which it was stopped by extensive washing with tap water. After air drying, the plate was read using KS ELISpot reader (Zeiss, Thornwood, NY) with software version KS ELISpot 4.9.16 (29 (link)). Results are reported as spots per 106 PBMCs. An increase of ≥32 spots per 106 PBMCs from baseline was defined as a positive result. The cut-off was determined as an increase of 3 standard deviations of the negative controls as was done in previous studies (13 (link)).
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5

Quantifying Antigen-Specific IFN-γ Secreting Cells

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Enumeration of antigen-specific IFN-γ secreting cells was done by ELISpot assay, as described before [3 (link),5 (link),10 (link),25 (link)]. Briefly, spleen cells (4 × 105/well) were added to ELISpot plates coated with an anti-IFN-γ antibody (Mabtech Inc., Cincinnati, OH, USA), followed by incubation in the presence of appropriate antigen-specific stimulant at a concentration of 2 µg/mL for 20 h at 37 °C, 5% CO2. A peptide corresponding to CD8+ T cell epitope OVA257-264: SIINFEKL (JPT Peptide Technologies GmbH, Berlin, Germany) was used as a stimulant. To measure background responses, cells were incubated in the absence of any stimulants. The plates were developed according to the manufacturer’s instructions. AEC substrate (Becton Dickenson, Franklin Lakes, NJ, USA) was added to visualize the spots. Spots were counted using an automated ELISpot plate reader (Cellular Technology LTD, Beachwood, OH, USA).
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6

Evaluating CD19 CAR T Cell Cytotoxicity

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CD19 CAR T cells were rested for 3 days after expansion in low‐dose IL‐2 (20 IU/ml) before they were cocultured with Daudi target cells at ratio of 1:1 for 20–24 h. IFN‐γ secretion from stimulated T cells was measured in supernatants by ELISA using an anti‐IFN‐γ antibody (Mabtech, Nacka Strand, Sweden) and the T cells were stained for expression of the degranulation marker CD107a using a FITC‐labeled anti‐CD107 antibody (BD Biosciences, Cat: 555800) and evaluated by flow cytometry.
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7

Quantifying Antigen-Specific IFN-γ Responses by ELISpot

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Enumeration of antigen-specific IFN-γ secreting cells was performed by ELISpot assay as previously described [15 (link),17 (link),21 (link)]. Briefly, spleen cells (at a final cell density of 4 × 105/well) were added to ELISPOT plates coated with an anti-IFN-γ antibody (Mabtech Inc., Cincinnati, OH, USA), and incubated in the presence of appropriate antigen-specific stimulant at a concentration of 2 µg/mL for 20 h at 37 °C, 5% CO2. For OVA protein-immunized animals, CD8 T cell epitope OVA257–264: SIINFEKL or CD4 T cell epitope OVA323–339: ISQAVHAAHAEINEAGR peptides (JPT Peptide Technologies GmbH, Berlin, Germany) were used as stimulants. Cells were also incubated without any stimulants to measure background responses. The plates were then incubated, washed and developed according to the manufacturer’s instructions. AEC substrate (Becton Dickenson, Franklin Lakes, NJ, USA) was used to visualize the spots. Spots were counted using an automated ELISpot plate reader (BIOSYS, Miami, FL, USA).
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8

Measuring SARS-CoV-2 Spike-specific T-cell Responses

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IFN-γ ELISpot assays were performed to measure Spike-specific T-cell responses64 (link). ELISPOT plates (S5EJ044I10; Merck Millipore, Darmstadt, Germany) pre-wetted with 30 µl of 70% ethanol for a maximum of 2 min, washed with sterile PBS and coated overnight at 4 °C with anti-IFN-γ antibody (10 µg/ml in PBS; clone 1-D1K; Mabtech, Nacka Strand, Sweden). Following overnight incubation, plates were washed with PBS and blocked with R10 (RPMI supplemented with penicillin–streptomycin, L-Glutamine, and 10% FBS) for a minimum of 2 h at 37 °C. The cells were then plated at 2 × 105 cells/well and cultured with overlapping peptide pools at 2 μg/ml or PHA (Sigma Aldrich, St Louis, MO) at 5 µg/ml as a positive control for 16–18 h at 37 °C. Plates were washed four times with 0.05% Tween/PBS (Sigma Aldrich) followed by two washes with PBS and then incubated for 2 h at room temperature with biotinylated anti-IFN-γ (1 μg/ml; clone mAb-7B6-1; Mabtech). Next, plates were washed and incubated with alkaline phosPHAtase-conjugated streptavidin (Mabtech) at 1:1000 dilution for 1 h. After six further washes, plates were developed using VECTASTAIN® Elite ABC-HRP according to the manufacturer’s instructions (Mabtech). All assays were performed in duplicate. Spots were counted using an automated ELISpot Reader System.
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9

Melan-A Peptide-specific CD8+ T Cells

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The generation of Melan-Aaa26–35*A27L peptide-specific CD8+ cells was investigated using the IFN-γ ELISpot assay. Expanded CD8+ cells were purified using immunomagnetic beads (MACS-system, Miltenyi Biotec, Bergisch Gladbach, Germany) and were incubated as effector cells (2 × 104/well) with peptide-loaded T2 cells as targets (1 × 105/well) at an effector/target ratio of 1:5 for 48 h in 96-well nitrocellulose-plates (Millipore, Eschborn, Germany) precated with anti-IFN-γ antibody (Mabtech AB, Nacka, Sweden) in a final volume of 200-μl culture medium. To obtain T2 cells loaded with Melan-Aaa26–35*A27L peptide or a HLA-A2-restricted control peptide, T2 cells were preincubated for two hours with 10 μg/mL of the respective peptide. After detection with biotinylated anti-cytokine-antibodies (Mabtech AB, Nacka, Sweden) and conjugation with Avidin ALP (Sigma, Deisenhofen, Germany), BCIP/NBT substrate (Sigma, Deisenhofen, Germany) was added. The spots of the IFN-y-secreting cells were counted with a computer-controlled microscope (Tecan sunrise™, Crailsheim, Germany).
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10

IFN-γ ELISpot Analysis of Engineered T Cells

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For IFN-γ Enzyme-linked immunospot (ELISpot) analysis against peptide-loaded T2 cells, T2 cells were pre-incubated with 20 μM gp100209–217 or Flu58–66 peptide for 3 hours at 37°C. 1,000 GPA7-28z-transduced or mock-transduced T cells (per well) were plated in triplicate and stimulated overnight with 5,000 peptide-loaded T2 cells (per well) on a 96-well ELISpot plate coated with anti-IFN-γ antibody (Mabtech AB, Hamburg, Germany). After 16 hours of incubation, plates were incubated with the respective capture antibodies and developed following the instructions of the human IFN-γ ELISpot kits (Mabtech AB). Tumor-specific activity was measured by incubating 10,000 T cells with the HLA-A2-positive melanoma cell lines (Malme-3m and MEL-624), HLA-A2-positive primary melanoma cells (Primary 1 and Parimary 2), and HLA-A2-negative melanoma cell lines (MEL-888, SK-MEL-28 and B16F10). All target cells were plated at 50,000 cells/well. IFN-γ and granzyme B releasing were detected using human IFN-γ and granzyme B ELISpot kits (both by Mabtech AB). Spots were counted using an automated reader (CTL ImmunoSpot S5 UV Analyser, CTL Europe, Bonn, Germany).
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