The largest database of trusted experimental protocols

7 protocols using peqgold trifast dna rna protein purification system reagent

1

Mycelia RNA Extraction Using TriFast

Check if the same lab product or an alternative is used in the 5 most similar protocols
0.01–0.03 g of harvested mycelia was homogenized in 1 ml of peqGOLD TriFast DNA/RNA/protein purification system reagent (VWR, part of Avantor Performance Materials, LLC, Radnor, PA, USA) using a FastPrep FP120 BIO101 ThermoSavant cell disrupter (Qbiogene, Carlsbad, US). RNA was isolated according to the manufacturer’s instructions, and the concentration was measured using the NanoDrop ONE (Thermo Scientific).
+ Open protocol
+ Expand
2

Fungal Mycelial RNA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
0.01–0.03 g of harvested mycelia were homogenized in 1 mL of peqGOLD TriFast DNA/RNA/protein purification system reagent (VWR, part of Avantor Performance Materials, LLC, Radnor, PA, USA) using a FastPrep FP120 BIO101 ThermoSavant cell disrupter (Qbiogene, Carlsbad, US). RNA was isolated according to the manufacturer’s instructions, and the concentration was measured using the NanoDrop ONE (Thermo Scientific).
+ Open protocol
+ Expand
3

Fungal mRNA Quantification via RT-qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fungal mycelia were homogenized in 1 ml of peqGOLDTriFast DNA/RNA/protein purification system reagent (PEQLAB Biotechnologie, Erlangen, Germany) using a FastPrep(R)-24 cell disrupter (MP Biomedicals, Santa Ana, CA, USA). RNA was isolated according to the manufacturer’s instructions, and the concentration was measured using the NanoDrop 1000 (Thermo Scientific, Waltham, US). Synthesis of cDNA from mRNA was carried out using the RevertAidTM H Minus First Strand cDNA Synthesis Kit (Thermo Scientific, Waltham, USA) according to the manufacturer’s instructions. Quantitative, reverse transcription PCRs (RT-qPCRs) were performed in a Rotor-Gene Q system (Qiagen, Hilden, Germany). All reactions were performed in triplicates. The reaction mixture (final volume 15 µl) contained 7.5 µl 2 x iQ SYBR Green Mix (Bio-Rad, Hercules, USA), 100 nM forward and reverse primer and 2.5 µl cDNA (diluted 1:20). Primer sequences are provided in (Table 1). Cycling conditions and control reactions were performed as described previously [24 (link)]. Data normalization using sar1 and act as reference genes and calculations were performed as published previously [24 (link)].
+ Open protocol
+ Expand
4

Fungal RNA Extraction and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fungal mycelia were homogenized in 1 mL of peqGOLDTriFast DNA/RNA/protein purification system reagent (PEQLAB Biotechnologie, Erlangen, Germany) using a FastPrep(R)-24 cell disrupter (MP Biomedicals, Santa Ana, CA, USA). RNA was isolated according to the manufacturer’s instructions, and the concentration was measured using the NanoDrop 1000 (Thermo Scientific, Waltham, US). Synthesis of cDNA from mRNA was carried out using the RevertAidTM H Minus First Strand cDNA Synthesis Kit (Thermo Fisher Scientific) according to the manufacturer’s instructions. Quantitative PCRs were performed in triplicates in a Rotor-Gene Q system (Qiagen). The amplification mixture (final volume 15 μL) contained 7.5 μL 2 × iQ SYBR Green Mix (Bio-Rad, Hercules, USA), 100 nM forward and reverse primer and 2.5 μL cDNA (diluted 1:20). Primer sequences are provided in Table 2. Cycling conditions and control reactions were performed as described previously [33 (link)]. Data normalization using sar1 and act as reference genes and calculations were performed as published previously [33 (link)].
+ Open protocol
+ Expand
5

Fungal Mycelia RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Approximately 20 mg of harvested mycelia were homogenized in 1 ml of peqGOLD TriFast DNA/RNA/protein purification system reagent (PEQLAB Biotechnologie, Erlangen, Germany) using a FastPrep FP120 BIO101 ThermoSavant cell disrupter (Qbiogene, Carlsbad, CA, United States). RNA was isolated according to the manufacturer’s instructions, and the concentration was measured using the NanoDrop 1000 (Thermo Scientific). Synthesis of cDNA from mRNA was carried out using the RevertAidTM H Minus First Strand cDNA Synthesis Kit (Thermo Scientific) according to the manufacturer’s instructions.
Reverse transcription polymerase chain reactions (RT-PCRs) were performed in a Mastercycler® ep realplex 2.2 system (Eppendorf, Hamburg, Germany). All reactions were performed in triplicates. The amplification mixture (final volume 25 μl) contained 12.5 μl 2 × iQ SYBR Green Mix (Bio-Rad), 100 nM forward and reverse primer, and 2.5 μl cDNA (diluted 1:100) as template. All used primers are listed in Supplementary Table S1. Cycling conditions and control reactions were performed as described earlier (Steiger et al., 2010 (link)).
+ Open protocol
+ Expand
6

Fungal RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
0.01–0.03 g of harvested mycelia were homogenized in 1 mL of peqGOLD TriFast DNA/RNA/protein purification system reagent (PEQLAB Biotechnologie, Erlangen, Germany) using a FastPrep FP120 BIO101 ThermoSavant cell disrupter (Qbiogene, Carlsbad, USA). RNA was isolated according to the manufacturer’s instructions, and the concentration was measured using the NanoDrop 1000 (Thermo Scientific).
Synthesis of cDNA from mRNA was carried out using the RevertAid™ H Minus First Strand cDNA Synthesis Kit (Thermo Scientific) according to the manufacturer’s instructions.
+ Open protocol
+ Expand
7

Mycelia RNA Extraction and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Approximately 20 mg of harvested mycelia was homogenized in 1 ml of peqGOLD TriFast DNA/RNA/protein purification system reagent (Peqlab Biotechnologie, Erlangen, Germany) using a FastPrep FP120 BIO101 ThermoSavant cell disrupter (Qbiogene, Carlsbad, CA). RNA was isolated according to the manufacturer's instructions, and the concentration was measured using a NanoDrop 1000 spectrophotometer (Thermo Scientific). Synthesis of cDNA from mRNA was carried out using the RevertAid H Minus first-strand cDNA synthesis kit (Thermo Scientific) according to the manufacturer's instructions.
Quantitative PCRs were performed in a Mastercycler ep realplex 2.2 system (Eppendorf, Hamburg, Germany). All reactions were performed in triplicates. The amplification mixture (final volume, 25 μl) contained 12.5 μl of 2× iQ SYBR green mix (Bio-Rad), 100 nM concentrations of the forward and reverse primers, and 2.5 μl of cDNA (diluted 1:100) as the template. All of the primers used are listed in Table 1. Cycling conditions and control reactions were as described previously (23 (link)). Calculations using sar1 and act1 as reference genes were performed as published previously (23 (link)).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!