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2 protocols using lysine d4

1

Comprehensive Metabolite Profiling Protocol

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The substances 1-Methylhistidine, adenine, adenosine, arginine, azelaic acid, chenodeoxycholic acid, cholic acid, citrulline, cortisol, cortisone, creatinine, deoxycholic acid, glutaric acid, glycocholic acid, hippuric acid, inosine, isoleucine, leucine, l-pyroglutamic acid, methionine, methylmalonic acid, mevalonolactone, N,N-dimethylglycine, nicotinic acid, p-aminobenzoic acid, phenylalanine, proline, raffinose, riboflavin, taurine, taurocholic acid, tryptophan, and uracil were purchased from Sigma-Aldrich (Buchs, Switzerland). Deuterated and heavy-labeled internal standards (IS) adenosine ribose-D1, arginine-13C6, caffeine 3-methyl-13C, carnitine trimethyl-D9, creatinine N-methyl-D3, deoxycholic acid-D4, D-fructose 13C, glycine-13C2, glycocholic acid-D4, hippuric acid 15N, kynurenine-D4, leucine-D10, lysine-D4, phenylalanine-D1, proline 15N, serine-D3, tryptophan-D5 and uric acid-15N2 were purchased from Cambridge Isotope Laboratories (Cambridge, MA, USA), and were delivered by ReseaChem Life Science (Burgdorf, Switzerland) or Sigma-Aldrich (Buchs, Switzerland). Water, acetonitrile (ACN), methanol (MeOH) of HPLC grade were obtained from Fluka (Buchs, Switzerland). All other chemicals used were from Merck (Zug, Switzerland) and were of the highest grade available.
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2

Isotopic Labeling for Lipidomic Analysis

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A GBS COH1 colony was inoculated into 15 mL of DM containing 450 μM lysine-d4 (Cambridge Isotopes Laboratories, Tewksbury, MA) or a single COH1 colony was inoculated into 10-mL DM supplemented with 0.5% w/v 13C6D-glucose (U-13C6, Cambridge Isotopes Laboratories) for overnight growth for lipidomic analysis described below.
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