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5 protocols using af1019

1

Immunofluorescent Analysis of Ovarian Tumor Markers

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Immunofluorescent staining was performed on 4 µm formalin-fixed, paraffin-embedded ovarian tumour sections. After deparaffinization, antigen retrieval was performed by boiling slides in sodium citrate buffer, and permeabilization was performed for nuclear antigens only using 0.25% v/v Triton X-100. Non-specific antibody binding was blocked with 5% BSA in PBS, and primary antibodies were applied and incubated overnight at 4 °C. Primary antibodies used were rabbit anti-wide-spectrum cytokeratin (#ab9377, 1:100, Abcam, Cambridge, UK), rabbit anti-Wilms tumor protein-1 (#ab89901, 1:100, Abcam), goat anti-PD-L1 (#AF1019, 1:125, R&D Systems, Minneapolis, MN, USA) and rabbit anti-p53 (#ab31333, 1:100, Abcam). Alexa Fluor® 594 or 647-conjugated goat anti-rabbit or donkey anti-goat secondary antibodies (1:1000, Abcam) were applied at 1:1000 for 1 h, and slides were mounted using ProLong™ Gold Antifade Mountant with DAPI (ThermoFisher Scientific). Fluorescence images were captured using the Cytation 3 imaging Multi-Mode Reader (BioTek) and processed using the Gen5™ software v 2.05 (BioTek).
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2

Immunofluorescence Analysis of Tumor Microenvironment

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Mice were sacrificed and their tumors were harvested. Sectioned and blocked samples were probed with the following antibodies at 4°C overnight: for ICD analysis, anticalreticulin, anti-HMGB1, and anti-HSP70 (ab2907, ab18256, and ab181606, Abcam); for assessment of CD8 infiltration, anti-CD8a (550281, BD Pharmingen); and for evaluation of PD-L1 expression in TME, anti-PD-L1 (AF1019, R&D Systems). Samples were washed with PBS three times and incubated with Alexa Fluor 488-conjugated antibody for 1 hour at RT. After three washes, mounting medium with DAPI was used to stain the nuclei. Images were visualized using an immunofluorescence microscope.
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3

Immunohistochemical Analysis of Mouse Tumor Samples

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Mouse tumors were excised either when they reached 10 mm or when they started to shrink following vaccine therapy. Specimens were fixed in 10% neutral buffered formalin (pH 6.8–7.2; Richard-Allan Scientific, Kalamazoo, Michigan, US) for paraffin embedding and sectioning. Five μm tissue sections were cut with a microtome, and sample processing and IF staining were performed as previously described using the following primary antibodies: CD3 rabbit anti-mouse mAb (1:100, ab16669, Abcam, Cambridge, Massachusetts, US) and PD-L1 goat anti-mouse polyclonal Ab (1:20, AF1019, R&D Systems, Minneapolis, Minnesota, US). Isotype-matched antibodies were used for negative controls. Sections were mounted with ProLong Diamond Antifade Mountant with DAPI (Thermo Fisher Scientific, Halethorpe, Maryland, US).
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4

IFN-γ Modulation of PD-L1 Glycosylation

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Cells were incubated for 24 h with recombinant IFN-γ as described above. Cell lysates were treated with 1.000 unit endoglycosidase H (endo H) (Promega, V4871) for 17 h at 37 °C in the presence the buffers recommended by the supplier. Samples were loaded onto an SDS-polyacrylamide gel and analyzed by immunoblotting using the anti-PD-L1 antibody (R&D Systems, AF1019).
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5

Quantifying Immune Checkpoint Proteins

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Section were used to detect the indicted protein expression with using the following primary antibodies: anti-PD-L1 (2.5 μg/ml, Catalog#: AF1019, R&D Systems), anti-PD-L2 (2.5 μg/ml, Catalog#: AF1022, R&D Systems), anti-PD-1 (2 μg/ml, Catalog#: AF1021, R&D Systems) and anti-VEGF (1:100, clone: C-1, Santa Cruz). A previously published protocol for immunohistochemistry was used [17 (link)].
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