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5 protocols using trifluoroacetic acid

1

Characterization of Polyphenol Compounds

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Acetonitrile, sodium carbonate, hydrochloric acid, formic acid, ascorbic acid, gallic acid, Folin-Ciocalteu reagent, catechin, malvidine-3-O-glucoside, trans-piceid, trans-resveratrol, sodium phosphate dibasic dodecahydrate, potassium phosphate monobasic, sodium carbonate and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (Saint-Quentin Fallavier, France). Sodium acetate and trifluoroacetic acid were obtained from Carlo Erba Reagents (Peypin, France), and methanol and phloroglucinol from Biosolve Chimie (Dieuze, France). The solvents used were High Performance Liquid Chromatography (HPLC) grade. Deionized water was obtained from a Milli-Q Advantage A10 purification system from Millipore (Fontenay sous Bois, France). Alpha-glucosidase from Saccharomyces cerevisiae, acarbose and para-nitrophenyl alpha-D-glucopyranoside (p-NPG) were purchased from Analytic Lab (Castelnau-le-Lez, France). Trans-astringin and trans-piceatannol were obtained from Carbosynth (Compton, UK) and ChromaDex (Irvine, CA, USA), respectively. Hopeaphenol, isohopeaphenol, Ɛ-viniferin, δ-viniferin and ω-viniferin were isolated from a grapevine raw shoot. The cis-isomers were obtained using Ultraviolet-C (UV-C) irradiation (254 nm) from trans-isomers.
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2

Antioxidant Capacity Evaluation Protocols

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Folin-Ciocalteu reagent, sodium carbonate, 2,2’-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), persulfate de potassium, 1,1-diphenyl-2-picrylhydrazyl free radical (DPPH), sodium acetate trihydrate, ferric chlorure, 2,4,6-tri(2-pyridyl)-s-triazine (TPTZ), iron(II) sulfate heptahydrate, phloroglucinol, ascorbic acid, sodium acetate, tartaric acid, sodium hydroxide, gallic acid, trolox, catechin, caffeic acid, trans- resveratrol, hydrochloric acid, and glacial acetic acid were purchased from Sigma-Aldrich (Saint-Quentin Fallavier, France). Oenin chloride was obtained from Extrasynthese (Genay, France). Acetonitrile, methanol, and water UPLC-MS were purchased from Biosolve Chimie (Dieuze, France) and trifluoroacetic acid from Carlo Erba Reagents (Peypin, France).
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Antioxidant and Anti-inflammatory Assay Protocol

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Folin Ciocalteu phenol reagent, sodium carbonate, 1,1-diphenyl-2-picrylhydrazyl (DPPH), Trolox, phloroglucinol, ascorbic acid, tartaric acid, sodium hydroxide, hydrochloric acid, lipopolysaccharide (LPS), Roswell Park Memorial Institute medium (RPMI) and Dulbecco’s Modified Eagle Medium (DMEM) mediums, fetal bovine serum (FBS), Griess reagent, 2′7′-dichlorodihydrofluoroscein diacetate acetyl (DCFH2-DA), 3-(4,5-dimethylethiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT), dimethyl sulfoxide (DMSO), glutamine, gallic acid, catechin, malvidin-3-O-glucoside, trans-piceid and trans-resveratrol were obtained from Sigma Aldrich (Steinheim, Germany). Trans-astringin was purchased from Carbosynth (Berkshire, UK) and trans-piceatannol from ChromaDex (Los Angeles, CA, USA). Acetonitrile, methanol and water LC-MS were obtained from Biosolve (Dieuze, France) and trifluoroacetic acid and sodium acetate were purchased from Carlo Erba (Peypin, France). RAW 264.7 cells were provided by ATCC (Manassas, VA, USA). ε-viniferin, δ-viniferin, ω-viniferin, pallidol, parthenocissin A, miyabenol C, hopeaphenol and isohopeaphenol were isolated from a grapevine raw shoot in our laboratory. The cis-isomers stilbenes were obtained from trans-isomers using by applying Ultraviolet-C irradiation (254 nm).
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Quantitative Proteomic Analysis Protocol

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dithiothreitol (DTT), pronase, ethylenediamine tetra-acetic acid (EDTA), collagen IV, urea, thio-urea, orthovanadate, glycerol, TRIS, iodoacetamide, NaCl, detergents (CHAPS, sodium deoxychotate, Triton X100), NH4CO3 and the Glu-fibrinopeptide were from Sigma-Aldrich (Saint-Quentin Fallavier, France). Anti-proteases were from Roche (Neuilly sur Seine, France). Bromophenol blue, SDS, acrylamide, silver staining kit were from Biorad (Marnes la Coquette, France). Trypsin for mass spectrometry was of highest grade purchased from Promega (Charbonnieres-les-bains, France). Acetonitril (ACN) and Tri-fluoro-acetic acid (TFA) were from Carlo Erba (Val de Reuil, France), Alpha-Cyano-4-Hydroxycinnamic Acid (HCCA) from Laser Biolabs (Sophia-Antipolis, France). iTRAQ reagents were from Applied Biosystems (Courtaboeuf, France)
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5

Enzymatic Assays for Bioactive Compounds

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Gallic acid, quercetin, Folin-Ciocalteu reagent, kojic acid, tyrosinase, acetylcholinesterase (Ache), butyrlcholinesterase (Buche), acetylthiocholine iodide (ATCI), butyrylthiocholine iodide (BUTCI) were purchased from Sigma–Aldrich (Steinheim, Germany). Galantamine, levodopa, DTNB were purchased from Alfa Aesar (Haverhill, MA, USA). DMSO, trifluoroacetic acid, aluminum chloride, potassium phosphate dibasic, potassium phosphate monobasic, potassium acetate were purchased from Carlo Erba (Emmendingen, Germany). Ethanol, sodium carbonate, sodium acetate, sodium phosphate monobasic, sodium phosphate dibasic, potassium chloride were purchased from Merck (Darmstadt, Germany). Cyanidin-3-glucoside was purchased from Extrasynthese (Geney, France). All of the chemicals were of analytical grade and water was obtained with Stakpure Omnia Type I Ultrapure Water Systems (Niederahr, Germany).
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